Browse Element(s) Details


Os.47398.1.S1_at

Description gb:AK102917.1
DB_XREF= gi:32988126
TID=Os.47398.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114A13, full insert sequence.
FL= gb:AK102917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4615011/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46110OsAffx.4509.1.S1_s_at8/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.24748.1.S1_at3/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.4509.1.S1_x_at1/112+28099353..28101044hypothetical protein
LOC_Os02g46120Os.52348.1.S1_at10/112+28102765..28107558regulatory protein, putative, expressed
LOC_Os02g46130Os.12716.1.S1_a_at11/112+28107762..28113117Aspartyl-tRNA synthetase, putative, expressed
LOC_Os02g46140Os.47398.2.A1_at11/112+28116496..28118283expressed protein
LOC_Os02g46150Os.47398.1.S1_at11/112+28117822..28122244Uncharacterised protein family containing protein, expressed
LOC_Os02g46159NANA2+28123823..28124520NA
LOC_Os02g46170OsAffx.25885.1.S1_at1/112+28127354..28128414hypothetical protein
LOC_Os02g46180Os.53154.1.S1_at11/112+28130478..28131590expressed protein
LOC_Os02g46190OsAffx.2977.1.S1_at11/112+28138319..28138792senescence-associated protein, putative
LOC_Os02g46200OsAffx.8908.1.S1_at7/112+28141085..28145322transposon protein, putative, Mutator sub-class
LOC_Os02g46200OsAffx.8908.1.S1_x_at5/112+28141085..28145322transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47398.1.S1_at--607--6571Chr02:28118783..28118900 (25 bp)
GATTCTGCCCATGGAAACTTCATCT
LOC_Os02g46150
Os.47398.1.S1_at--574--1251Chr02:28118735..28118759 (25 bp)
AGATTGATCCCCTCACGAAGTATGT
LOC_Os02g46150
Os.47398.1.S1_at--383--6091Chr02:28118250..28118274 (25 bp)
GAGTACAAGCTGTTGGCGTTGCTCC
LOC_Os02g46150
Os.47398.1.S1_at--762--1371Chr02:28118214..28118238 (25 bp)
AGAGCCGAAAGCCTCTGCCGGAAAA
LOC_Os02g46150
Os.47398.1.S1_at--163--31Chr02:28118152..28118176 (25 bp)
ATTGGCATTCCAGGATGTGTCTTTG
LOC_Os02g46150
Os.47398.1.S1_at--212--7151Chr02:28118134..28118158 (25 bp)
GTCTTTGTTCATATGAGCGGCTTCA
LOC_Os02g46150
Os.47398.1.S1_at--1061--5891Chr02:28118067..28118091 (25 bp)
GAGCTGCTATCAAGTGTTGACTCAA
LOC_Os02g46150
Os.47398.1.S1_at--954--8731Chr02:28118011..28118035 (25 bp)
TGTCACCCATGAGCTGCAGTAACAC
LOC_Os02g46150
Os.47398.1.S1_at--91--6091Chr02:28117938..28117962 (25 bp)
GAGTACTCATGTTCCTTGCGTAAAA
LOC_Os02g46150
Os.47398.1.S1_at--700--10711Chr02:28117923..28117947 (25 bp)
TTGCGTAAAACATCCTTAGCTGACA
LOC_Os02g46150
Os.47398.1.S1_at--976--8431Chr02:28117893..28117917 (25 bp)
GGCCAGTTGCCTTTTTAATCTCGAA
LOC_Os02g46150
Target Sequence 
GATTCTGCCCATGGAAACTTCATCTGTNTGAGCTTGAAGAGGAGCTGAAGATTGATCCCCTCACGAAGTATGTGTTGTAC
CAGGATGAGAGGAGCAAAAGTTGGAGAGTACAAGCTGTTGGCGTTGCTCCGGATAGATTTGAGAGCCGAAAGCCTCTGCC
GGAAAAGTGGAGGGGCTTGAGAGATGATGAACTGTCAAACGATATTGGCATTCCAGGATGTGTCTTTGTTCATATGAGCG
GCTTCATTGGCGGCAATAAGACGTANGAGGGAGCGTTGGAAATGGCAAGAGCTGCTATCAAGTGTTGACTCAANGTTCGA
CGGAGGCTTCAANCAGTAACGCACTGTCACCCATGAGCTGCAGTAACACAGTTAACCAGTTGAACTTCATGTTATTATTG
ACTCGTAATTGACATTTGAGTACTCATGTTCCTTGCGTAAAACATCCTTAGCTGACAGGAGAGGCCAGTTGCCTTTTTAA
TCTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis