Browse Element(s) Details


Os.4742.1.S2_at

Description gb:AK072448.1
DB_XREF= gi:32982471
TID=Os.4742.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114G23, full insert sequence.
FL= gb:AK070328.1 gb:AK072448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0453011/11GYF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04450Os.16140.1.S1_at10/117+1968074..1970246expressed protein
LOC_Os07g04460NANA7+1972628..1972867hypothetical protein
LOC_Os07g04470OsAffx.16080.1.S1_at10/117+1974591..1975788GRF zinc finger family protein
LOC_Os07g04480Os.49936.1.S1_at11/117+1976356..1979759SWIM zinc finger family protein, expressed
LOC_Os07g04490OsAffx.5209.1.S1_at10/117+1981923..1983107hypothetical protein
LOC_Os07g04500Os.9770.1.S1_at10/117+1983792..1986156expressed protein
LOC_Os07g04510OsAffx.31549.2.S1_x_at11/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04510OsAffx.31549.1.S1_x_at4/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04520OsAffx.28262.1.S1_x_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04520OsAffx.28262.1.S1_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S1_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S2_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04540OsAffx.28263.1.S1_at11/117+2004905..2005690hypothetical protein
LOC_Os07g04550Os.46529.1.S1_a_at11/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04550Os.17736.1.S1_at1/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04560OsAffx.16082.1.S1_at11/117+2021458..2023361No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0010114biological_processresponse to red light
GO:0010218biological_processresponse to far red light
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4742.1.S2_at--764--10391Chr07:2003699..2003723 (25 bp)
TTTTGACCGCAATGGCGAGTTCATC
LOC_Os07g04530
Os.4742.1.S2_at--539--4071Chr07:2003714..2003738 (25 bp)
CGAGTTCATCGATAAGTTCCTCAAC
LOC_Os07g04530
Os.4742.1.S2_at--59--2311Chr07:2003844..2003868 (25 bp)
AAAGGAGCCTCCAGCACCGAGACGG
LOC_Os07g04530
Os.4742.1.S2_at--751--8191Chr07:2003978..2004002 (25 bp)
GGAAGATTAGGAACAGCGTATGACG
LOC_Os07g04530
Os.4742.1.S2_at--485--6671Chr07:2004023..2004047 (25 bp)
GTTGCTCACAAAGAGCTGTCGTCTT
LOC_Os07g04530
Os.4742.1.S2_at--96--151Chr07:2004076..2004100 (25 bp)
ATTATGCCGCTCATGAGTAGTTTTT
LOC_Os07g04530
Os.4742.1.S2_at--65--10771Chr07:2004117..2004141 (25 bp)
TTGACGATGCGCTCATGAGGTGATT
LOC_Os07g04530
Os.4742.1.S2_at--500--6411Chr07:2004197..2004221 (25 bp)
GATCTGATCAATTTTCGTTTGTTGT
LOC_Os07g04530
Os.4742.1.S2_at--227--8691Chr07:2004225..2004249 (25 bp)
TGTGAATTATGCCATGATACATGAT
LOC_Os07g04530
Os.4742.1.S2_at--998--4831Chr07:2004250..2004274 (25 bp)
GCTAATATAGAATTTCCTGCTGCAA
LOC_Os07g04530
Os.4742.1.S2_at--433--9271Chr07:2004264..2004288 (25 bp)
TCCTGCTGCAAGATCAAAAAGAATT
LOC_Os07g04530
Target Sequence 
TTTTGACCGCAATGGCGAGTTCATCGATAAGTTCCTCAACTACAAGGCNTTCCTGTCNACTGATNTGATCGAGATGGCCT
TCCAGCTACCTGCCCGTGNTGTCCGTGGGGACGNTGCAGGGCNTGCNAACCATGCCTCNNCAGCCAAAGGAGCCTCCAGC
ACCGAGACGGAGCTGGACGGAGGAAAGAAGAAAGGGAAGAAGGGGAAGAAGGTGAGTGCAGCAGTTTTAGGATTCAATGT
AGTCAGCANCCGTATAATGATGGGTGAGATCCAGAACGTGGAAGATTAGGAACAGCGTATGACGGCACCGTTGTACATAC
TTTTGTTGCTCACAAAGAGCTGTCGTCTTAGATTTGTTGCAATGGCAACCGAGCTTAATTATGCCGCTCATGAGTAGTTT
TTGGTTCATCCCTTTTTTTTGACGATGCGCTCATGAGGTGATTTTGGTTCCTGTAACTTACAGTAGATTTTCTTCTCATA
GAAATTTCAGTAGGGGTTGATCTGATCAATTTTCGTTTGTTGTTTATGTGAATTATGCCATGATACATGATGCTAATATA
GAATTTCCTGCTGCAAGATCAAAAAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4742.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis