Browse Element(s) Details


Os.47421.1.S1_at

Description gb:AK066046.1
DB_XREF= gi:32976064
TID=Os.47421.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013048I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048I21, full insert sequence.
FL= gb:AK066046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3720011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37180NANA5+21647720..21648037transposon protein, putative, unclassified
LOC_Os05g37190Os.54232.1.S1_at11/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.29835.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.2.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37200Os.47421.1.S1_at11/115+21667636..21670977Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g37210OsAffx.14991.1.S1_at11/115+21675159..21676472anthocyanin-related membrane protein 1, putative
LOC_Os05g37220OsAffx.27206.1.S1_x_at11/115+21676659..21677393hypothetical protein
LOC_Os05g37220OsAffx.27206.1.S1_s_at10/115+21676659..21677393hypothetical protein
LOC_Os05g37220Os.23651.1.A1_at1/115+21676659..21677393hypothetical protein
LOC_Os05g37230OsAffx.447.1.S1_at4/115+21689891..21694442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g37230Os.52609.1.S1_at1/115+21689891..21694442retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47421.1.S1_at--625--5271Chr05:21670432..21670453 (22 bp)
GAATGACCATTCTTCGGACAGTGGA
LOC_Os05g37200
Os.47421.1.S1_at--367--6191Chr05:21670562..21670586 (25 bp)
GAGGAAGTTCATATCTGTTAGTGGG
LOC_Os05g37200
Os.47421.1.S1_at--436--7071Chr05:21670588..21670612 (25 bp)
GTCAATGTACAAAGTCACCTCCCGG
LOC_Os05g37200
Os.47421.1.S1_at--968--1131Chr05:21670600..21670624 (25 bp)
AGTCACCTCCCGGTGTTGAATTTGG
LOC_Os05g37200
Os.47421.1.S1_at--382--1511Chr05:21670681..21670705 (25 bp)
AGCACCGGAGTTTTGTTTGCCCTCT
LOC_Os05g37200
Os.47421.1.S1_at--73--10291Chr05:21670696..21670720 (25 bp)
TTTGCCCTCTATAACTACAACCAGT
LOC_Os05g37200
Os.47421.1.S1_at--422--3251Chr05:21670713..21670737 (25 bp)
CAACCAGTTGATGATCCATTGTCAT
LOC_Os05g37200
Os.47421.1.S1_at--620--1031Chr05:21670751..21670775 (25 bp)
AGGTCCAGCTCTCTTAAGTGTTTTG
LOC_Os05g37200
Os.47421.1.S1_at--763--6011Chr05:21670777..21670801 (25 bp)
GAGAGATCTTTTAGAATCCTTGTAT
LOC_Os05g37200
Os.47421.1.S1_at--484--10731Chr05:21670823..21670847 (25 bp)
TTGAAACCCCTGCTTTATCAATAGG
LOC_Os05g37200
Os.47421.1.S1_at--216--7411Chr05:21670848..21670872 (25 bp)
GTGTATTAGGCAATTTATTTTCCCT
LOC_Os05g37200
Target Sequence 
GAATGACCATTCTTCGGACAGTGGAACAAGAACAACTGCAANTACAGAANCAGCAGCCCAATACCAGCAACTTNCAGGAG
AGNATAATTCAACAGGAATTGGTTCGAACGNNANCCAAGAAAGGNAACAAGAGGAGGAAGTTCATATCTGTTAGTGGGGG
TCAATGTACAAAGTCACCTCCCGGTGTTGAATTTGGGCATAATTACATATGGTTACAAAGGGCAAAANAAAANAAAGAAT
ATGCTAGGGGGAAAGCACCGGAGTTTTGTTTGCCCTCTATAACTACAACCAGTTGATGATCCATTGTCATCTGCCTGCCA
CCAAGGTCCAGCTCTCTTAAGTGTTTTGTGAGAGATCTTTTAGAATCCTTGTATATATATGTTTTCCTTTGTTTTTTGAA
ACCCCTGCTTTATCAATAGGGTGTATTAGGCAATTTATTTTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis