Browse Element(s) Details


Os.47430.1.S1_x_at

Description gb:AK071466.1
DB_XREF= gi:32981489
TID=Os.47430.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023096A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096A15, full insert sequence.
FL= gb:AK071466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0102011/11Paired amphipathic helix repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g00998NANA5+2342..3402retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01002NANA5+3623..4090hypothetical protein
LOC_Os05g01006OsAffx.8762.1.S1_at1/115+4598..8876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01010OsAffx.26673.1.S1_at11/115+12587..14164hypothetical protein
LOC_Os05g01020Os.47430.1.S1_x_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01020Os.16909.1.S1_s_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01030OsAffx.26674.1.S1_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S1_x_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S2_at4/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01040Os.28975.1.S1_at11/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01040Os.51196.1.S1_x_at10/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01050Os.2473.1.S1_at11/115+48925..51138DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47430.1.S1_x_at--121--7371Chr05:23756..23780 (25 bp)
GTGACTATCCCGATTTACTCGAGGA
LOC_Os05g01020
Os.47430.1.S1_x_at--7--1551Chr05:23726..23750 (25 bp)
AGCATTTCTTGCCTGATACGTCAAC
LOC_Os05g01020
Os.47430.1.S1_x_at--534--4771Chr05:23700..23724 (25 bp)
GCTCCAGAACCGGTAACTGTTCCTA
LOC_Os05g01020
Os.47430.1.S1_x_at--977--6691Chr05:23682..23706 (25 bp)
GTTCCTAGAGGTGTTTCAAGCAGAC
LOC_Os05g01020
Os.47430.1.S1_x_at--231--3791Chr05:23632..23656 (25 bp)
CTCGGCAAGGAACGCGCAGATCATT
LOC_Os05g01020
Os.47430.1.S1_x_at--882--1331Chr05:23195..23219 (25 bp)
AGAGGGCTTATCCATCAACTGTCGA
LOC_Os05g01020
Os.47430.1.S1_x_at--920--9411Chr05:23170..23194 (25 bp)
TCGTGACTTCAGTATTGATCGCCCT
LOC_Os05g01020
Os.47430.1.S1_x_at--779--8851Chr05:23155..23179 (25 bp)
TGATCGCCCTGATCCTGAGGATGAT
LOC_Os05g01020
Os.47430.1.S1_x_at--292--7991Chr05:23137..23161 (25 bp)
GGATGATCCCCACAGAAGGCGTGTT
LOC_Os05g01020
Os.47430.1.S1_x_at--448--7991Chr05:22987..23011 (25 bp)
GGATGGTGCTCTTGCTGACACACAA
LOC_Os05g01020
Os.47430.1.S1_x_at--717--591Chr05:22630..22654 (25 bp)
ATGCCTTCACATATACAGCCAGGAA
LOC_Os05g01020
Target Sequence 
GTGACTATCCCGATTTACTCGAGGAGTTCAAGCATTTCTTGCCTGATACGTCAACCGCTCCAGAACCGGTAACTGTTCCT
AGAGGTGTTTCAAGCAGACACGACGACAGGGGCCCACTAATGCCCTCGGCAAGGAACGCGCAGATCATTAAGAGGGAGAG
GGCTTATCCATCAACTGTCGATCGTGACTTCAGTATTGATCGCCCTGATCCTGAGGATGATCCCCACAGAAGGCGTGTTG
ACAAGGGAAGGGATGGTAAGGTTGATCGCAGTAGAAAAGATTATGAAACGGACGTGAAAGACGTTGAATATGACAGCAAA
GATTTGGATGGAGGACAACGTAAGCGCAAACTAGCAAGGAAGATGGATGGTGCTCTTGCTGACACACAACAAGGTGGGGT
TAGCACCTCTACTTCACCATACGACGATAAGGATGCATTGAAGAGTGCATACACAAAGGAGTTCCGTTTTTGTGAGAAAG
TAAAGGAGAAGCTAGAGCCTGAAGCTTACCAGGAGTTTTTGAAATGCCTTCACATATACAGCCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47430.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis