Browse Element(s) Details


Os.47452.1.A1_at

Description gb:AK070805.1
DB_XREF= gi:32980828
TID=Os.47452.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47452 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023071G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023071G16, full insert sequence.
FL= gb:AK070805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g272407/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27180Os.45976.1.S1_x_at3/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27180Os.45976.1.S1_at2/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27190OsAffx.17182.1.S1_at11/118+16478119..16478981F-box domain containing protein
LOC_Os08g27200OsAffx.17183.1.S1_at6/118+16483581..16484332hypothetical protein
LOC_Os08g27210OsAffx.17184.1.S1_at11/118+16486485..16487024hypothetical protein
LOC_Os08g27210Os.43876.2.S1_x_at1/118+16486485..16487024hypothetical protein
LOC_Os08g27220OsAffx.5949.1.S1_at11/118+16487328..16488266AP2 domain containing protein
LOC_Os08g27230NANA8+16488851..16489342hypothetical protein
LOC_Os08g27240Os.47452.1.A1_at7/118+16494729..16500531expressed protein
LOC_Os08g27250Os.54554.1.S1_at11/118+16506958..16509404expressed protein
LOC_Os08g27260OsAffx.29379.1.S1_at11/118+16512898..16513149hypothetical protein
LOC_Os08g27270OsAffx.21897.5.S1_x_at6/118+16518364..16521304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27280NANA8+16521622..16527714retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47452.1.A1_at--1140--11Chr08:16499935..16499959 (25 bp)
ATTGGCTTCTTTTCTTTCGCACAAT
LOC_Os08g27240
Os.47452.1.A1_at--1030--8151Chr08:16499976..16500000 (25 bp)
GGAACTAGTCTATATCCCCATCCGC
LOC_Os08g27240
Os.47452.1.A1_at--293--6671Chr08:16500181..16500205 (25 bp)
GTTGCGCAAAGGTGGTTTCTATGCC
LOC_Os08g27240
Os.47452.1.A1_at--316--311Chr08:16500247..16500271 (25 bp)
ATACCATAGCAAGGGCAAGGCTCTA
LOC_Os08g27240
Os.47452.1.A1_at--445--3671NONE
CTTATACTCCTTTGATGAACTTGTC
NONE
Os.47452.1.A1_at--442--10711Chr08:16500320..16500344 (25 bp)
TTGCTGTGGATCTCATTATCTGGTT
LOC_Os08g27240
Os.47452.1.A1_at--812--471NONE
ATCTGGTTGTTGGTTTATTAAGCGC
NONE
Os.47452.1.A1_at--324--2671NONE
AAGCGCGACCAAATTTGAATCTTGA
NONE
Os.47452.1.A1_at--805--4451Chr08:16500422..16500446 (25 bp)
GCCTAGGCTTTTAAATCGCTTTACA
LOC_Os08g27240
Os.47452.1.A1_at--686--7911NONE
GGTTGCTTCATTCAGTTGATCTCTA
NONE
Os.47452.1.A1_at--1026--8831Chr08:16500480..16500504 (25 bp)
TGATCTCTACATCTTGTCAACGGTA
LOC_Os08g27240
Target Sequence 
ATTGGCTTCTTTTCTTTCGCACAATCCNAGATGAAGCTATTGGAACTAGTCTATATCCCCATCCGCCAAGATGGTCTGCA
TCCCTTGCGAAGNACAGAGTTAAGGGAAGTATGGTGTCAAAACCAGCTAGGTGAAGGATACAAAGGCAGTGGCAATTTGT
AGTTGCGCAAAGGTGGTTTCTATGCCNGATGNTGAGAGAATGTGCAGCTCACTTGCACATCAACAATATACCATAGCAAG
GGCAAGGCTCTATGTTGAGTGAATCCAAACTTATACTCCTTTGATGAACTTGTCTTGTTTTTGCTGTGGATCTCATTATC
TGGTTGTTGGTTTATTAAGCGCGACCAAATTTGAATCTTGAAAGTTGAATTTAGAGATGTTTTTTTNNATTGTAGTGTAA
GCCTAGGCTTTTAAATCGCTTTACATATTCCCTTTTTTTAATGGTTGCTTCATTCAGTTGATCTCTACATCTTGTCAACG
GTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47452.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis