Browse Element(s) Details


Os.47468.1.A1_s_at

Description gb:BX898888
DB_XREF= gi:40488402
DB_XREF=BX898888
CLONE=y806a08p3
TID=Os.47468.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47468 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1745011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17410OsAffx.12897.1.S1_at11/113+9659941..9664916expressed protein
LOC_Os03g17420OsAffx.31174.4.S1_x_at2/113+9670333..9672388transposon protein, putative, unclassified
LOC_Os03g17420OsAffx.31174.5.S1_x_at1/113+9670333..9672388transposon protein, putative, unclassified
LOC_Os03g17426NANA3+9674093..9674812hypothetical protein
LOC_Os03g17432OsAffx.12898.1.S1_at11/113+9678228..9679442pre-mRNA splicing factor ATP-dependent RNA helicase mog-4, putative
LOC_Os03g17440Os.17031.1.S1_at11/113+9679555..9682476expressed protein
LOC_Os03g17450Os.47468.1.A1_s_at11/113+9682748..9686229expressed protein
LOC_Os03g17450Os.46888.1.S1_at11/113+9682748..9686229expressed protein
LOC_Os03g17460Os.38428.1.S1_at11/113+9687259..9689143IN2-1 protein, putative, expressed
LOC_Os03g17470Os.27671.1.S1_at11/113+9691275..9693994IN2-1 protein, putative, expressed
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47468.1.A1_s_at--723--5691Chr03:9686046..9686070 (25 bp)
GACTTTGTACGTTTGCACTCTACTG
LOC_Os03g17450
Os.47468.1.A1_s_at--888--6991Chr03:9686052..9686076 (25 bp)
GTACGTTTGCACTCTACTGTCAGTC
LOC_Os03g17450
Os.47468.1.A1_s_at--1115--9011Chr03:9686059..9686083 (25 bp)
TGCACTCTACTGTCAGTCGCTTTTA
LOC_Os03g17450
Os.47468.1.A1_s_at--854--9531Chr03:9686064..9686088 (25 bp)
TCTACTGTCAGTCGCTTTTATGTTA
LOC_Os03g17450
Os.47468.1.A1_s_at--1024--7111Chr03:9686070..9686094 (25 bp)
GTCAGTCGCTTTTATGTTATTTTGT
LOC_Os03g17450
Os.47468.1.A1_s_at--298--4891Chr03:9686099..9686123 (25 bp)
GCTTTTAGTTGTGCTACTTCATTTC
LOC_Os03g17450
Os.47468.1.A1_s_at--754--6631Chr03:9686106..9686130 (25 bp)
GTTGTGCTACTTCATTTCTCTAATT
LOC_Os03g17450
Os.47468.1.A1_s_at--90--7331Chr03:9686109..9686133 (25 bp)
GTGCTACTTCATTTCTCTAATTTCA
LOC_Os03g17450
Os.47468.1.A1_s_at--376--10551Chr03:9686121..9686145 (25 bp)
TTCTCTAATTTCATGTGTAAACTGG
LOC_Os03g17450
Os.47468.1.A1_s_at--427--8671Chr03:9686134..9686158 (25 bp)
TGTGTAAACTGGAAGTTGCTGTTGC
LOC_Os03g17450
Os.47468.1.A1_s_at--783--8771Chr03:9686153..9686177 (25 bp)
TGTTGCCCCCAGTTTACAACAGAAA
LOC_Os03g17450
Target Sequence 
GACTTTGTACGTTTGCACTCTACTGTCAGTCGCTTTTATGTTATTTTGTTTGTGCTTTTAGTTGTGCTACTTCATTTCTC
TAATTTCATGTGTAAACTGGAAGTTGCTGTTGCCCCCAGTTTACAACAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47468.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis