Browse Element(s) Details


Os.4750.1.S1_x_at

Description gb:NM_187993.1
DB_XREF= gi:34903069
TID=Os.4750.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1597011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15910OsAffx.11069.1.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.4.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.1.S1_x_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15920NANA1+8965529..8965735hypothetical protein
LOC_Os01g15934NANA1+8970406..8974984retrotransposon, putative, centromere-specific
LOC_Os01g15950NANA1+8975807..8976082expressed protein
LOC_Os01g15960OsAffx.23265.1.S1_at11/111+8980566..8980895hypothetical protein
LOC_Os01g15970Os.4750.1.S1_x_at11/111+8983055..8984199expressed protein
LOC_Os01g15970Os.55385.1.S1_at11/111+8983055..8984199expressed protein
LOC_Os01g15979Os.94.1.S1_at11/111+8985713..8989380gb protein, putative, expressed
LOC_Os01g15990OsAffx.22206.1.S1_at11/111+8992117..8993694expressed protein
LOC_Os01g15990OsAffx.27180.1.S1_x_at1/111+8992117..8993694expressed protein
LOC_Os01g16000Os.96.1.S1_at9/111+9001392..9004857SEC14 cytosolic factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4750.1.S1_x_at--730--4151Chr01:8983293..8983444 (25 bp)
CGCCGCCACGGTTTCGTCAGCGAAT
LOC_Os01g15970
Os.4750.1.S1_x_at--55--3351Chr01:8983299..8983450 (25 bp)
CACGGTTTCGTCAGCGAATCTCGAT
LOC_Os01g15970
Os.4750.1.S1_x_at--51--10311Chr01:8983304..8983455 (25 bp)
TTTCGTCAGCGAATCTCGATTGGAA
LOC_Os01g15970
Os.4750.1.S1_x_at--502--4011Chr01:8983437..8983458 (22 bp)
CGTCAGCGAATCTCGATTGGAATGA
LOC_Os01g15970
Os.4750.1.S1_x_at--776--1631Chr01:8983438..8983462 (25 bp)
AGCGAATCTCGATTGGAATGAGGGA
LOC_Os01g15970
Os.4750.1.S1_x_at--219--1331Chr01:8983462..8983486 (25 bp)
AGAGGTGGCGGTGGCGACTCCGCTA
LOC_Os01g15970
Os.4750.1.S1_x_at--285--8451Chr01:8983473..8983493 (21 bp)
TGGCGACTCCGCTAGGACAGGAGGC
LOC_Os01g15970
Os.4750.1.S1_x_at--893--7693Chr08:20088622..20089090 (25 bp)
GGAGGAGGAGGGTGACCGGCCGCCG
NONE
Os.4750.1.S1_x_at--854--1692Chr01:8983624..8983648 (25 bp)
ACCGGCCGCCGGAGAGGGTGGAGAT
LOC_Os01g15970
Os.4750.1.S1_x_at--22--6251Chr01:8983646..8983670 (25 bp)
GATGGAGTCCATCAACGACTACGGC
LOC_Os01g15970
Os.4750.1.S1_x_at--410--6111Chr01:8983650..8983674 (25 bp)
GAGTCCATCAACGACTACGGCCAAG
LOC_Os01g15970
Target Sequence 
CGCCGCCACGGTTTCGTCAGCGAATCTCGATTGGAATGAGGGAGAGGTGGCGGTGGCGACTCCGCTAGGACAGGAGGCGG
TGGCGGCGGCGGAGGAGGAGGGTGACCGGCCGCCGGAGAGGGTGGAGATGGAGTCCATCAACGACTACGGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4750.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis