Browse Element(s) Details


Os.47518.1.A1_at

Description gb:BX900036
DB_XREF= gi:40490612
DB_XREF=BX900036
CLONE=p850a06p3
TID=Os.47518.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47518 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T45865 (A.thaliana) T45865 hypothetical protein F3A4.200 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g109004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10870NANA5+5999516..6005529retrotransposon protein, putative, unclassified
LOC_Os05g10880Os.31312.1.S1_at1/115+6005985..6006612retrotransposon protein, putative, unclassified
LOC_Os05g10890NANA5+6013510..6018549retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10900OsAffx.14627.1.S1_at11/115+6025977..6029301hypothetical protein
LOC_Os05g10900Os.47518.1.A1_at4/115+6025977..6029301hypothetical protein
LOC_Os05g10910OsAffx.14628.1.S1_at11/115+6029504..6030094expressed protein
LOC_Os05g10920Os.49373.1.S1_at11/115+6036677..6039590expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47518.1.A1_at--1124--10071NONE
TAGGACTTTTTAGCGCTGGATCAAA
NONE
Os.47518.1.A1_at--392--151NONE
ATTAGGAACAGATGTTACTGCCTAT
NONE
Os.47518.1.A1_at--242--5711NONE
GACTAAGCTTATGTACATGCATGAT
NONE
Os.47518.1.A1_at--12--7971NONE
GGATCATGGCACCACCATTTGCGCA
NONE
Os.47518.1.A1_at--488--6651NONE
GTTGATCCCAGGTAAATACTCAGCG
NONE
Os.47518.1.A1_at--40--7831NONE
GGTAAATACTCAGCGGCCAACAGTC
NONE
Os.47518.1.A1_at--1108--4391Chr05:6027649..6027673 (25 bp)
GCCAACAGTCTGTCTGACTCAAAGA
LOC_Os05g10900
Os.47518.1.A1_at--937--6271Chr05:6027689..6027713 (25 bp)
GATGTACCTGGTACCATGTCTTATT
LOC_Os05g10900
Os.47518.1.A1_at--1019--6971Chr05:6027699..6027723 (25 bp)
GTACCATGTCTTATTTATATCCACT
LOC_Os05g10900
Os.47518.1.A1_at--311--351Chr05:6027742..6027766 (25 bp)
ATAAGGCCTGGAACAGACTTTTCTT
LOC_Os05g10900
Os.47518.1.A1_at--860--5691NONE
GACTTTTCTTAACTCGTGTATTCTA
NONE
Target Sequence 
TAGGACTTTTTAGCGCTGGATCAAACATGTCCAAAATTAGGAACAGATGTTACTGCCTATGTTATTTTCATGACTAAGCT
TATGTACATGCATGATGATGTAGCACTGTTGGCTAGAAAGGGGATCATGGCACCACCATTTGCGCACTGACAGAGATGTA
TCGCAGCTCTTTACGAAGCTGACGAAAGGTGTGGTATTTGATTTCTATGGGAATTATTACCTCATGCCCCTGTCTTTAGC
ATTGGAGGCACATTACCAGAATCGTCTGCACAGGTGGATTGCATGGTTGAAGCACAACCATCTTAGTAACCCTTGGCTGG
CCGTGGCAGGGTTGGCTGGTGTTATCGTGCTTTTCTGCACTGTTGCACAGACTGTCCTTACTGTCTTGTCTTATGTTGAT
CCCAGGTAAATACTCAGCGGCCAACAGTCTGTCTGACTCAAAGATTACAGGTAAAATTAGATGTACCTGGTACCATGTCT
TATTTATATCCACTTGAGTTCCAACAGAAGGAATAAGGCCTGGAACAGACTTTTCTTAACTCGTGTATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47518.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis