Browse Element(s) Details


Os.4780.1.S1_at

Description gb:AK105729.1
DB_XREF= gi:32990938
TID=Os.4780.1
CNT=72
FEA=FLmRNA
TIER=FL+Stack
STK=29
UG=Os.4780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H01, full insert sequence.
FL= gb:AK105729.1 gb:AK121316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g552905/11Gibberellin-regulated protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55240Os.11193.1.S1_at10/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55240Os.51328.1.S1_at2/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55250Os.27225.1.S1_at11/113+31387566..31388756Cytochrome P450 81E1, putative, expressed
LOC_Os03g55260Os.10430.1.S1_at11/113+31392494..31394611Cytochrome P450 family protein, expressed
LOC_Os03g55270Os.10385.1.S1_at11/113+31394612..31397826TIP41-like family protein, expressed
LOC_Os03g55280Os.10389.1.S1_at11/113+31399385..31402519aspartate-semialdehyde dehydrogenase family protein, expressed
LOC_Os03g55290Os.4780.1.S1_at5/113+31404120..31404506Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os03g55300OsAffx.3612.1.S1_at11/113+31407632..31408360expressed protein
LOC_Os03g55310NANA3+31408868..31410664SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55320Os.38297.1.S1_a_at11/113+31411064..31413815protein phosphatase 2C family protein, putative, expressed
LOC_Os03g55330Os.51893.1.S1_at11/113+31415190..31419011ankyrin repeat family protein, putative, expressed
LOC_Os03g55340Os.52369.1.S1_at11/113+31419097..31422237pentatricopeptide, putative, expressed
LOC_Os03g55350Os.10403.1.S1_at11/113+31426929..31429788cucumisin-like serine protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4780.1.S1_at--457--10651Chr03:31404423..31404447 (25 bp)
TTCCCTCCAAGTTTCCATGGCTGGA
LOC_Os03g55290
Os.4780.1.S1_at--1--4351Chr03:31404304..31404433 (25 bp)
CCATGGCTGGATCAGATTTCTGCGA
LOC_Os03g55290
Os.4780.1.S1_at--913--3431Chr03:31404292..31404315 (24 bp)
CAGATTTCTGCGACGGCAAGTGCAA
LOC_Os03g55290
Os.4780.1.S1_at--1148--1851Chr03:31404241..31404265 (25 bp)
ACGACGACTGCCTCAAGTACTGCGG
LOC_Os03g55290
Os.4780.1.S1_at--735--871Chr03:31404127..31404151 (25 bp)
ATGGCGCTCGCAAGAGGCCCAAGTG
LOC_Os03g55290
Os.4780.1.S1_at--811--8391Chr03:31404112..31404136 (25 bp)
GGCCCAAGTGCCCATGATCATTTTT
NONE
Os.4780.1.S1_at--898--4431Chr03:31404061..31404085 (25 bp)
GCCATCATCCGTAGTTGCTTTGCAT
NONE
Os.4780.1.S1_at--1141--631Chr03:31403996..31404020 (25 bp)
ATGCATATGCTTGCCATGATCGATC
NONE
Os.4780.1.S1_at--1061--711Chr03:31403981..31404005 (25 bp)
ATGATCGATCGTATGGACCATGCAA
NONE
Os.4780.1.S1_at--506--6431Chr03:31403927..31403951 (25 bp)
GATCTTGAGTCTTTCCATGTTCTTG
NONE
Os.4780.1.S1_at--593--2991Chr03:31403839..31403863 (25 bp)
AATGTATACATGCATGCCTGGTGAT
NONE
Target Sequence 
TTCCCTCCAAGTTTCCATGGCTGGATCAGATTTCTGCGACGGCAAGTGCAAGGTGAGGTGCTCGAAGGCGAGCAGGCACG
ACGACTGCCTCAAGTACTGCGGCGTGTGCTGCGCCTCCTGCAACTGCGTGCCGTCGGGGACGGCCGGCAACAAGGACGAG
TGCCCCTGCTACCGCGACATGACCACCGGCCATGGCGCTCGCAAGAGGCCCAAGTGCCCATGATCATTTTTGCATTATGC
ATGCTACATGATGCTTAGCCATCATCCGTAGTTGCTTTGCATGCATGATGCATGCTCATGATCGAGATGGAGTAGTAGAT
ATATGCATATGCTTGCCATGATCGATCGTATGGACCATGCAAAGTATGCTTGTTTGTGTGAGGATCGACTCGATCTTGAG
TCTTTCCATGTTCTTGGTTTTCTTTTTTTACTGCTAGTTAATTACTATGGAGTACATGTGAATATGACATCGGATATGTA
ATGTATACATGCATGCCTGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis