Browse Element(s) Details


Os.47902.1.S1_at

Description gb:AK106459.1
DB_XREF= gi:32991668
TID=Os.47902.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-G04, full insert sequence.
FL= gb:AK106459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g392909/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39250Os.27343.1.A1_at11/1111+22867253..22874086transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g39260Os.49908.1.S1_at11/1111+22874214..22877337RGH2A, putative
LOC_Os11g39270NANA11+22878808..22884814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39280Os.56221.1.S1_at11/1111+22888587..22890384expressed protein
LOC_Os11g39290Os.47902.1.S1_at9/1111+22893148..22896449Leucine Rich Repeat family protein, expressed
LOC_Os11g39300OsAffx.31383.1.S1_at9/1111+22897537..22900222hypothetical protein
LOC_Os11g39310Os.50270.1.S1_at11/1111+22902130..22905847NB-ARC domain containing protein, expressed
LOC_Os11g39320Os.49419.1.S1_at11/1111+22906779..22911705NB-ARC domain containing protein, expressed
LOC_Os11g39330NANA11+22914301..22917314NB-ARC domain containing protein
LOC_Os11g39350Os.53674.1.S1_at11/1111+22920527..22925366expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47902.1.S1_at--954--6731Chr11:22895819..22895843 (25 bp)
GTTCATGTCCAGCTCTCAAAACAGA
LOC_Os11g39290
Os.47902.1.S1_at--876--2971Chr11:22895907..22895931 (25 bp)
AATGGGATCATCATCTACCCGTTCC
LOC_Os11g39290
Os.47902.1.S1_at--634--9951NONE
TACCCGTTCCGTGAGCTGCTGAGAT
NONE
Os.47902.1.S1_at--121--9131NONE
TGCTGAGATTGTCCGTCGATTGCCG
NONE
Os.47902.1.S1_at--333--591Chr11:22895994..22896018 (25 bp)
ATGCCGAAGCTAACTGACCTCGAGC
LOC_Os11g39290
Os.47902.1.S1_at--427--1811Chr11:22896109..22896133 (25 bp)
ACGCGTGGTACATCAACAGCCGGAG
LOC_Os11g39290
Os.47902.1.S1_at--676--7031Chr11:22896182..22896206 (25 bp)
GTACACGGTCAAGCTCGTCAACAAT
LOC_Os11g39290
Os.47902.1.S1_at--813--1811Chr11:22896275..22896299 (25 bp)
ACGCGCGTGTATACTGTCAACTTGT
LOC_Os11g39290
Os.47902.1.S1_at--239--7071Chr11:22896298..22896322 (25 bp)
GTCAATTGTCATGTACGCTTACCAT
LOC_Os11g39290
Os.47902.1.S1_at--808--8951Chr11:22896346..22896370 (25 bp)
TGACATTCTGCAAGCTCTGGCCCAT
LOC_Os11g39290
Os.47902.1.S1_at--1039--3171Chr11:22896383..22896407 (25 bp)
CAATAAAGTCGTCTGGTCTTCTGTT
LOC_Os11g39290
Target Sequence 
GTTCATGTCCAGCTCTCAAAACAGAAGCAACAGAGCTCCCCTGAACTCAAAAATCCATGAAGAAGAAGAAGACGGCGACG
ACGAGAAGAATGGGATCATCATCTACCCGTTCCGTGAGCTGCTGAGATTGTCCGTCGATTGCCGGGTGCCATGGCTGGTG
TTCAAGGAAGGGGCCATGCCGAAGCTAACTGACCTCGAGCTGAAGCTCTCCACGGGCCCGGCGAGCCATGAGAGCCCGCC
GTCGGGCATCGCCAACCTCCTGAGCCTCGAGCAGGTCGCCGTGCAGTACGACGCGTGGTACATCAACAGCCGGAGCGTCA
GGGCGACGGTGGACGCCATCCGGAGGCAGGTCGCCGAGCTCCGGTACACGGTCAAGCTCGTCAACAATGGCGTCGAGGAG
GATGTGGAGGCAGTAATTAATCCTCGCCGAGACAGCTGAGCGCGGTAAGAACGGAGACGCGCGTGTATACTGTCAACTTG
TCAATTGTCATGTACGCTTACCATGTTGCTCCACCTTCCCTCCTTCCTGACATTCTGCAAGCTCTGGCCCATGCACCAGC
AAGTCAATAAAGTCGTCTGGTCTTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis