Browse Element(s) Details


Os.47903.1.A1_at

Description gb:AK106454.1
DB_XREF= gi:32991663
TID=Os.47903.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F09, full insert sequence.
FL= gb:AK106454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4178011/11guanine nucleotide exchange family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41750OsAffx.15881.1.S1_at11/116+25024005..25033554TPR Domain containing protein, expressed
LOC_Os06g41760NANA6+25037385..25038575hypothetical protein
LOC_Os06g41770Os.10686.1.S1_at9/116+25040775..25043104bZIP transcription factor family protein, expressed
LOC_Os06g41780Os.47903.1.A1_at11/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41780OsAffx.11966.1.S1_x_at1/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41790Os.7462.1.S1_at11/116+25053772..25057838RNA recognition motif family protein, expressed
LOC_Os06g41800Os.55092.1.S1_at11/116+25065393..25070031Dihydroflavonol-4-reductase, putative, expressed
LOC_Os06g41810Os.15971.1.S1_at11/116+25072609..25075490NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47903.1.A1_at--382--8131Chr06:25052868..25052892 (25 bp)
GGACTATCTTTCGACATCCTTGATT
LOC_Os06g41780
Os.47903.1.A1_at--736--5231Chr06:25053044..25053068 (25 bp)
GAATAGAATCGATTTTGCCAGCATT
LOC_Os06g41780
Os.47903.1.A1_at--720--4411Chr06:25053060..25053084 (25 bp)
GCCAGCATTCATTTCAGGCAATACG
LOC_Os06g41780
Os.47903.1.A1_at--339--5731Chr06:25053110..25053134 (25 bp)
GACTGACATAGAATTTGCCCCTTAT
LOC_Os06g41780
Os.47903.1.A1_at--797--10091Chr06:25053132..25053156 (25 bp)
TATGGCTGGACTCTCTTGAGACCGA
LOC_Os06g41780
Os.47903.1.A1_at--319--6151Chr06:25053166..25053190 (25 bp)
GAGGTAATATTTCGCAACCCTATAA
LOC_Os06g41780
Os.47903.1.A1_at--320--951Chr06:25053245..25053269 (25 bp)
AGGACAGCATGCTCATTGCTCGCAA
LOC_Os06g41780
Os.47903.1.A1_at--604--9351Chr06:25053264..25053288 (25 bp)
TCGCAAAGCCACAATCCATCATGTA
LOC_Os06g41780
Os.47903.1.A1_at--633--1171Chr06:25053304..25053328 (25 bp)
AGTACTTTCAACCATGTGCCGTGGA
LOC_Os06g41780
Os.47903.1.A1_at--94--7291Chr06:25053319..25053343 (25 bp)
GTGCCGTGGAAACACCTGAGCTACT
LOC_Os06g41780
Os.47903.1.A1_at--948--1551Chr06:25053417..25053441 (25 bp)
AGCTAGACTAGCCTTGTACCTAAAA
LOC_Os06g41780
Target Sequence 
GGACTATCTTTCGACATCCTTGATTTATCTTATCTGTTTCGAAATCCTGGAGTTCAAGTTTAATATGATCAATCCAGATA
CGTGAGGGAATAGAATCGATTTTGCCAGCATTCATTTCAGGCAATACGAGACTATCAGTAAATGAACATTGTAGACTGAC
ATAGAATTTGCCCCTTATGGCTGGACTCTCTTGAGACCGATGATGTGTTGAGGTAATATTTCGCAACCCTATAATGCGGA
CATAAGATTTACCCGATNTGTGGAGGTAATATGNTATTGTCAAACTGAAGGACAGCATGCTCATTGCTCGCAAAGCCACA
ATCCATCATGTATATTACTAGTTCCATAGTACTTTCAACCATGTGCCGTGGAAACACCTGAGCTACTAGATGAATTCGCT
CTATGAAATTCTGTTTTTGTTTTTCTTTTTGTAATANCTTTTGTTGTGAAACTAAAGTAGAGCTAGACTAGCCTTGTACC
TAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47903.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis