Browse Element(s) Details


Os.47906.1.A1_at

Description gb:AK105838.1
DB_XREF= gi:32991047
TID=Os.47906.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F04, full insert sequence.
FL= gb:AK105838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4977011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49740Os.13714.1.S1_at11/116+30086164..30088574expressed protein
LOC_Os06g49750NANA6+30091168..30092515expressed protein
LOC_Os06g49760Os.12838.1.S1_at11/116+30104877..30105835pectinesterase inhibitor domain containing protein, expressed
LOC_Os06g49770Os.47906.1.A1_at11/116+30112942..30114504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g49780Os.14276.1.S1_at11/116+30116757..30117752expressed protein
LOC_Os06g49790Os.8460.1.S1_at11/116+30121868..30127016JD1, putative, expressed
LOC_Os06g49800Os.20605.1.S1_at10/116+30127201..30133099Ubiquitin interaction motif family protein, expressed
LOC_Os06g49810Os.18081.1.S1_at11/116+30135599..30140160Glycosyltransferase QUASIMODO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47906.1.A1_at--743--9071Chr06:30113944..30113968 (25 bp)
TGCTTCTTCAGCTTCCACTGGAAAC
LOC_Os06g49770
Os.47906.1.A1_at--422--5551Chr06:30113964..30113988 (25 bp)
GAAACGCTGCATCTACAGGTACCTG
LOC_Os06g49770
Os.47906.1.A1_at--323--2131Chr06:30113978..30114002 (25 bp)
ACAGGTACCTGTGCTTAATTAGAAC
LOC_Os06g49770
Os.47906.1.A1_at--51--2571Chr06:30114160..30114184 (25 bp)
AACTGAGCCTCTCTTTTGTTTGCTG
LOC_Os06g49770
Os.47906.1.A1_at--719--6851Chr06:30114177..30114201 (25 bp)
GTTTGCTGAATCTTGCAGCGGCCAA
LOC_Os06g49770
Os.47906.1.A1_at--459--4971Chr06:30114226..30114250 (25 bp)
GCATCGCCTGAGCTTGATCAGTGCA
LOC_Os06g49770
Os.47906.1.A1_at--355--411Chr06:30114242..30114266 (25 bp)
ATCAGTGCATCGTCCTTGGTAGGCT
LOC_Os06g49770
Os.47906.1.A1_at--505--9611Chr06:30114273..30114297 (25 bp)
TCATCTGGTGGACGATCATGGCGCA
LOC_Os06g49770
Os.47906.1.A1_at--890--10031Chr06:30114400..30114424 (25 bp)
TAGATTGCTGTTCTTCGCCGGTCGA
LOC_Os06g49770
Os.47906.1.A1_at--437--7211Chr06:30114420..30114444 (25 bp)
GTCGATCAGTTCCTCGGTTGAATCA
LOC_Os06g49770
Os.47906.1.A1_at--686--6631Chr06:30114447..30114471 (25 bp)
GTTGTTTAATTCTGTACTGTCCAAA
LOC_Os06g49770
Target Sequence 
TGCTTCTTCAGCTTCCACTGGAAACGCTGCATCTACAGGTACCTGTGCTTAATTAGAACAACAATTTTCGCTGTCAACTC
AGAACATCACAATTCAGATTATGTTTCAGTTTTCCACAGTATGAACTGGCAGCCAAATTAAAACCTCTCTGTATGAGATC
ATTTCAAGCTTGCTTAGAAATTTCCAGTGATTCACAGACATGTAGCTGTAATTTGTAACTGAGCCTCTCTTTTGTTTGCT
GAATCTTGCAGCGGCCAAGCCAACGGCGAGCGGAGGCGCAACGCATCGCCTGAGCTTGATCAGTGCATCGTCCTTGGTAG
GCTNCAGCTTCATCTGGTGGACGATCATGGCGCAGTAGTAATTAAGATCCAGAAGAGCAGTTTCAAGTTTGCTAGTTGGT
CACTACTATATGATGAGGAAGTACATAGGATTGTATTGGCAAAATTCTTTCTTCTGTAGATTGCTGTTCTTCGCCGGTCG
ATCAGTTCCTCGGTTGAATCAGAGTTGTTTAATTCTGTACTGTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47906.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis