Browse Element(s) Details


Os.47918.1.S1_at

Description gb:AK102958.1
DB_XREF= gi:32988167
TID=Os.47918.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115G22, full insert sequence.
FL= gb:AK102958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0516011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed
LOC_Os11g05140OsAffx.18679.1.S1_at11/1111+2253062..2257005expressed protein
LOC_Os11g05140Os.10529.1.S1_s_at11/1111+2253062..2257005expressed protein
LOC_Os11g05150NANA11+2260356..2261258hydroxyproline-rich glycoprotein family protein, putative
LOC_Os11g05160Os.47918.1.S1_at11/1111+2266868..2269937expressed protein
LOC_Os11g05170OsAffx.18681.1.S1_s_at11/1111+2272259..2272979expressed protein
LOC_Os11g05180Os.24492.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05180Os.20319.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05190Os.1307.1.S1_a_at11/1111+2287185..2288453Phytosulfokines 2 precursor, putative, expressed
LOC_Os11g05200OsAffx.30824.1.S1_at11/1111+2293555..2294286Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47918.1.S1_at--205--3491Chr11:2269359..2269383 (25 bp)
CAGGCAGCTCCTGGAACTAATGGTT
LOC_Os11g05160
Os.47918.1.S1_at--236--2691Chr11:2269481..2269505 (25 bp)
AAGCTCCACAGGTTTCACCATGGTT
LOC_Os11g05160
Os.47918.1.S1_at--568--1991Chr11:2269569..2269593 (25 bp)
ACTCCTCAGGAGTAGCATCAGCTAT
LOC_Os11g05160
Os.47918.1.S1_at--706--9751Chr11:2269650..2269674 (25 bp)
TAATCTTTGCCATGTGCGATGACAA
LOC_Os11g05160
Os.47918.1.S1_at--36--9531Chr11:2269689..2269713 (25 bp)
TCTAATCCATTAGGTCTGCGGTTTA
LOC_Os11g05160
Os.47918.1.S1_at--969--251Chr11:2269775..2269799 (25 bp)
ATAGTCTATTAGTTGCAGTTGCCCT
LOC_Os11g05160
Os.47918.1.S1_at--360--5031Chr11:2269789..2269813 (25 bp)
GCAGTTGCCCTCATCTAATTGTTAG
LOC_Os11g05160
Os.47918.1.S1_at--163--1271Chr11:2269851..2269875 (25 bp)
AGATTTCATTCTCGCTGTTGCTGGC
LOC_Os11g05160
Os.47918.1.S1_at--1109--10691Chr11:2269868..2269892 (25 bp)
TTGCTGGCTCTTGTACTTTTGCATT
LOC_Os11g05160
Os.47918.1.S1_at--860--10271Chr11:2269885..2269909 (25 bp)
TTTGCATTATGTGTGTTCCTTGGAA
LOC_Os11g05160
Os.47918.1.S1_at--89--10871Chr11:2269913..2269937 (25 bp)
TTGGAGCTTTTGAAGCCTGTTCTAC
LOC_Os11g05160
Target Sequence 
CAGGCAGCTCCTGGAACTAATGGTTGCCATGCGCCGCAGGTCTCATNTATGCATCCGCAAGCCCACACCGGTGTAATGGA
GCACANTGCAACAGCCAGTGGCGCCATGAACCTNAACAGCTCAAGCTCCACAGGTTTCACCATGGTTGGGTGNNCCAGTC
AGCTCACAGTCCATGGGGCACAGGCCTTCACCTGACATCAATGTCTGCTTAACTCCTCAGGAGTAGCATCAGCTATTGAG
CTATCATCTTTTGTCACCCCCATCCCTGACACATTTTGTAGGGCATGGCTGTTAATCTTTGCCATGTGCGATGACAAATT
ATGGGCTCTATTCTAATCCATTAGGTCTGCGGTTTAATTTTGGGGGGAGAAACTAGGCAAGACTAAGGACAATTTAGCCA
GAATCTGACAGAATGTGATAGTCTATTAGTTGCAGTTGCCCTCATCTAATTGTTAGGATATGTCATTGTGTTGGGACATC
TGGTTTGTGATTCAGATTTCATTCTCGCTGTTGCTGGCTCTTGTACTTTTGCATTATGTGTGTTCCTTGGAAGATTTGGA
GCTTTTGAAGCCTGTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis