Browse Element(s) Details

Os.47925.1.S2_at

Description

gb:CB635876
DB_XREF= gi:29630867
DB_XREF=OSIIEb16L09.f
CLONE=OSIIEb16L09
TID=Os.47925.1
CNT=3
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.47925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026L09, full insert sequence
FL= gb:AK100172.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g08140	11/11	D-mannose binding lectin family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g08120	Os.49576.1.S1_at	11/11	8	+	4604159..4606390	B-box zinc finger family protein, expressed
LOC_Os08g08120	Os.11132.1.S1_s_at	11/11	8	+	4604159..4606390	B-box zinc finger family protein, expressed
LOC_Os08g08130	Os.31233.1.S1_at	1/11	8	+	4611650..4613757	transposon protein, putative, Pong sub-class
LOC_Os08g08140	Os.47925.1.S2_at	11/11	8	+	4625376..4632335	D-mannose binding lectin family protein, expressed
LOC_Os08g08140	OsAffx.16890.1.S1_x_at	11/11	8	+	4625376..4632335	D-mannose binding lectin family protein, expressed
LOC_Os08g08140	Os.47925.1.S1_x_at	10/11	8	+	4625376..4632335	D-mannose binding lectin family protein, expressed
LOC_Os08g08150	OsAffx.16891.1.S1_at	11/11	8	+	4635122..4635837	hypothetical protein
LOC_Os08g08160	OsAffx.16892.1.S1_at	11/11	8	+	4638954..4642364	hypothetical protein
LOC_Os08g08170	Os.26818.2.S1_at	1/11	8	+	4642555..4646046	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180	OsAffx.10637.3.S1_s_at	11/11	8	+	4650960..4653671	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180	OsAffx.10637.1.S1_s_at	11/11	8	+	4650960..4653671	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180	OsAffx.10637.4.S1_s_at	11/11	8	+	4650960..4653671	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180	Os.33878.1.S1_at	6/11	8	+	4650960..4653671	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180	Os.27102.1.S1_x_at	1/11	8	+	4650960..4653671	transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0016020	cellular_component	membrane
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0016301	molecular_function	kinase activity
GO:0019199	molecular_function	transmembrane receptor protein kinase activity
GO:0030246	molecular_function	carbohydrate binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47925.1.S2_at--234--239	1	Chr08:4630505..4630529 (25 bp)	AAACGGTATGAGTTCTTGCTTCTCT	LOC_Os08g08140
Os.47925.1.S2_at--982--691	1	Chr08:4630510..4630534 (25 bp)	GTATGAGTTCTTGCTTCTCTTCATC	LOC_Os08g08140
Os.47925.1.S2_at--1098--673	1	Chr08:4630516..4630540 (25 bp)	GTTCTTGCTTCTCTTCATCTGCTAA	LOC_Os08g08140
Os.47925.1.S2_at--1154--1057	1	Chr08:4630524..4630548 (25 bp)	TTCTCTTCATCTGCTAACTGCTTAC	LOC_Os08g08140
Os.47925.1.S2_at--769--47	1	Chr08:4630532..4630556 (25 bp)	ATCTGCTAACTGCTTACCTTCATAC	LOC_Os08g08140
Os.47925.1.S2_at--1048--489	1	Chr08:4630543..4630567 (25 bp)	GCTTACCTTCATACAGACATTTTTC	LOC_Os08g08140
Os.47925.1.S2_at--328--567	1	Chr08:4630558..4630582 (25 bp)	GACATTTTTCAATTCTTCCGAGCCC	LOC_Os08g08140
Os.47925.1.S2_at--153--319	1	Chr08:4630567..4630591 (25 bp)	CAATTCTTCCGAGCCCTAGTGAGAG	LOC_Os08g08140
Os.47925.1.S2_at--924--617	1	Chr08:4630614..4630638 (25 bp)	GAGGAATCAATATGGCCGTCTTTTT	LOC_Os08g08140
Os.47925.1.S2_at--138--973	1	Chr08:4630620..4630644 (25 bp)	TCAATATGGCCGTCTTTTTTAAACA	LOC_Os08g08140
Os.47925.1.S2_at--443--549	1	Chr08:4630675..4630699 (25 bp)	GAACATTAATTACTCTACCTTATAT	LOC_Os08g08140

Target Sequence

AAACGGTATGAGTTCTTGCTTCTCTTCATCTGCTAACTGCTTACCTTCATACAGACATTTTTCAATTCTTCCGAGCCCTA
GTGAGAGGGGCCTTTTAATAGTGGGGAAAGAGGAATCAATATGGCCGTCTTTTTTAAACAATTAGACGAAAAAAATCAGA
GAGGTAGTATGAACATTAATTACTCTACCTTATAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis