Browse Element(s) Details


Os.47959.1.S1_at

Description gb:AK066275.1
DB_XREF= gi:32976293
TID=Os.47959.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061M24, full insert sequence.
FL= gb:AK066275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g120905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12030OsAffx.24926.1.S1_x_at11/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12030OsAffx.24926.3.S1_at1/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12040OsAffx.24926.3.S1_at11/112+6254346..6256373Leucine Rich Repeat family protein
LOC_Os02g12050OsAffx.11996.1.S1_at10/112+6259006..6260059hypothetical protein
LOC_Os02g12060OsAffx.2581.1.S1_at11/112+6261071..6261623proteinase inhibitor Rgpi9, putative
LOC_Os02g12070OsAffx.11997.1.S1_at11/112+6265995..6267117expressed protein
LOC_Os02g12080OsAffx.11998.1.S1_s_at11/112+6268374..6269146expressed protein
LOC_Os02g12090Os.47959.1.S1_at5/112+6270427..6271229hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_x_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.4.S1_at2/112+6274686..6279131hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47959.1.S1_at--963--31Chr02:6270414..6270438 (25 bp)
ATTGTGAGCCACCATGGGAGCTGCT
NONE
Os.47959.1.S1_at--484--371Chr02:6270560..6270584 (25 bp)
ATCAAGGCCGTGTATTTGCTTCAGG
LOC_Os02g12090
Os.47959.1.S1_at--519--10531Chr02:6270579..6270603 (25 bp)
TTCAGGCATATCAACACGGTCTCTT
LOC_Os02g12090
Os.47959.1.S1_at--364--1931Chr02:6270594..6270618 (25 bp)
ACGGTCTCTTCGAATTCTATCTCAA
LOC_Os02g12090
Os.47959.1.S1_at--571--10551Chr02:6270608..6270672 (25 bp)
TTCTATCTCAAAATCCAGGTCCCGG
LOC_Os02g12090
Os.47959.1.S1_at--1150--10131Chr02:6271199..6271223 (25 bp)
TATCTCTTCCGGACGCGGCAACAAT
LOC_Os02g12090
Os.47959.1.S1_at--538--5991Chr02:6271250..6271274 (25 bp)
GAGAGTACCCAAGAACCGATTAGAA
NONE
Os.47959.1.S1_at--1091--9751Chr02:6271276..6271300 (25 bp)
TAAGCAGGCCGATCCAGGTGTTAGA
NONE
Os.47959.1.S1_at--497--6851Chr02:6271400..6271424 (25 bp)
GTTTCCATACTCTATTGGCGTGTTC
NONE
Os.47959.1.S1_at--60--4411Chr02:6271446..6271470 (25 bp)
GCCACCGTGTTGCAGTACAGTACTT
NONE
Os.47959.1.S1_at--801--2712Chr05:7096327..7096346 (20 bp)
AAGCACAACCGAACATGTCCTATAT
NONE
Target Sequence 
ATTGTGAGCCACCATGGGAGCTGCTCGGCTTTGCGTTGGGTTGCAGGCAATCCTAGTGNTGTCCCTCTTGCTGCCGCCGC
CGTTTCTGCCATGCGTGCTCGCCGGCGCTGGCCCTGGAGGCGAGCTCGTCGCCGGCGAGGAGAAGCATCAAGGCCGTGTA
TTTGCTTCAGGCATATCAACACGGTCTCTTCGAATTCTATCTCAAAATCCAGGTCCCGGCGGNGAACACCATCCTCCTAT
CTCTTCCGGACGCGGCAACAATGGATAAAGGCTAGACAATGGATNTATGAGAGTACCCAAGAACCGATTAGAACTAAGCA
GGCCGATCCAGGTGTTAGAACTACGTTTAGGAATAAGAGTAAAAATACGAATTATCAAGATAAAATAAAGCTCTCCAGAT
ATAATTCTGGAGGTTAGGTNTACTAACTTGTAATACAAGTTTCCATACTCTATTGGCGTGTTCGGCTGTCTTNATTTGNA
CCGTGCCACCGTGTTGCAGTACAGTACTTTTATGTGTGCAAAGCACAACCGAACATGTCCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis