Browse Element(s) Details


OsAffx.11996.1.S1_at

Description tigr:9630.m01090
TID=OsAffx.11996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1205010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12020OsAffx.24203.1.S1_at11/112+6236706..6237184hypothetical protein
LOC_Os02g12030OsAffx.24926.1.S1_x_at11/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12030OsAffx.24926.3.S1_at1/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12040OsAffx.24926.3.S1_at11/112+6254346..6256373Leucine Rich Repeat family protein
LOC_Os02g12050OsAffx.11996.1.S1_at10/112+6259006..6260059hypothetical protein
LOC_Os02g12060OsAffx.2581.1.S1_at11/112+6261071..6261623proteinase inhibitor Rgpi9, putative
LOC_Os02g12070OsAffx.11997.1.S1_at11/112+6265995..6267117expressed protein
LOC_Os02g12080OsAffx.11998.1.S1_s_at11/112+6268374..6269146expressed protein
LOC_Os02g12090Os.47959.1.S1_at5/112+6270427..6271229hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_x_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.4.S1_at2/112+6274686..6279131hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11996.1.S1_at--109--8271Chr02:6259047..6259071 (25 bp)
GGCAGTACTACTGGTGTCCCTCTTG
LOC_Os02g12050
OsAffx.11996.1.S1_at--437--1171Chr02:6259050..6259074 (25 bp)
AGTACTACTGGTGTCCCTCTTGCTG
LOC_Os02g12050
OsAffx.11996.1.S1_at--630--8911NONE
TGAGCACGCCGGAGTGAATGTAGAC
NONE
OsAffx.11996.1.S1_at--72--5291Chr02:6259900..6259924 (25 bp)
GAATGTAGACAAATCTCACGGGATA
LOC_Os02g12050
OsAffx.11996.1.S1_at--902--5351Chr02:6259939..6259963 (25 bp)
GAAGAAGCATCCAGTACGTCGGTTA
LOC_Os02g12050
OsAffx.11996.1.S1_at--87--4991Chr02:6259945..6259969 (25 bp)
GCATCCAGTACGTCGGTTATTTCTA
LOC_Os02g12050
OsAffx.11996.1.S1_at--913--3991Chr02:6259955..6259979 (25 bp)
CGTCGGTTATTTCTAGGCTTGGCAA
LOC_Os02g12050
OsAffx.11996.1.S1_at--242--8291Chr02:6259970..6259994 (25 bp)
GGCTTGGCAACTAATAGGCATCGTC
LOC_Os02g12050
OsAffx.11996.1.S1_at--450--931Chr02:6259985..6260009 (25 bp)
AGGCATCGTCGAATTCTGTTCTACC
LOC_Os02g12050
OsAffx.11996.1.S1_at--51--7211Chr02:6259992..6260016 (25 bp)
GTCGAATTCTGTTCTACCGAAATCC
LOC_Os02g12050
OsAffx.11996.1.S1_at--507--9511Chr02:6260004..6260028 (25 bp)
TCTACCGAAATCCAGGTTACTTCTC
LOC_Os02g12050
Target Sequence 
GGCAGTACTACTGGTGTCCCTCTTGCTGCTGCCCGGATGTCTCGCCGGCCGTCGTGAGCACGCCGGAGTGAATGTAGACA
AATCTCACGGGATAGTAATCAACTGGGAGAAGAAGCATCCAGTACGTCGGTTATTTCTAGGCTTGGCAACTAATAGGCAT
CGTCGAATTCTGTTCTACCGAAATCCAGGTTACTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis