Browse Element(s) Details


OsAffx.24203.1.S1_at

Description tigr:9630.m01087
TID=OsAffx.24203.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1202011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11980OsAffx.24926.1.S1_x_at11/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11980OsAffx.24926.2.S1_at2/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11990OsAffx.24202.1.S1_at10/112+6215998..6219187hypothetical protein
LOC_Os02g12000OsAffx.11994.1.S1_at11/112+6222957..6223378hypothetical protein
LOC_Os02g12010OsAffx.24926.2.S1_at11/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12010OsAffx.24926.1.S1_x_at6/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12020OsAffx.24203.1.S1_at11/112+6236706..6237184hypothetical protein
LOC_Os02g12030OsAffx.24926.1.S1_x_at11/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12030OsAffx.24926.3.S1_at1/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12040OsAffx.24926.3.S1_at11/112+6254346..6256373Leucine Rich Repeat family protein
LOC_Os02g12050OsAffx.11996.1.S1_at10/112+6259006..6260059hypothetical protein
LOC_Os02g12060OsAffx.2581.1.S1_at11/112+6261071..6261623proteinase inhibitor Rgpi9, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24203.1.S1_at--879--9311Chr02:6237109..6237133 (25 bp)
TCCCTCTTGCTGCAGATGACATTAT
LOC_Os02g12020
OsAffx.24203.1.S1_at--1124--671Chr02:6237094..6237118 (25 bp)
ATGACATTATTTCTGCCGTGTGCGC
LOC_Os02g12020
OsAffx.24203.1.S1_at--1047--7291Chr02:6237075..6237099 (25 bp)
GTGCGCTCGCCACCGATGGCAGAAA
LOC_Os02g12020
OsAffx.24203.1.S1_at--669--851Chr02:6237060..6237084 (25 bp)
ATGGCAGAAAGCCTTCCCAGCTACT
LOC_Os02g12020
OsAffx.24203.1.S1_at--242--10651Chr02:6237047..6237071 (25 bp)
TTCCCAGCTACTGATCATGGGCAGA
LOC_Os02g12020
OsAffx.24203.1.S1_at--199--651Chr02:6237019..6237043 (25 bp)
ATGCATCAAGGCTTGGATCCAACCA
LOC_Os02g12020
OsAffx.24203.1.S1_at--66--2631Chr02:6236999..6237023 (25 bp)
AACCAAATCCACACGATGTCGTCGA
LOC_Os02g12020
OsAffx.24203.1.S1_at--770--751Chr02:6236984..6237008 (25 bp)
ATGTCGTCGAATCCTAGTGCCGCGG
LOC_Os02g12020
OsAffx.24203.1.S1_at--629--9171Chr02:6236967..6236991 (25 bp)
TGCCGCGGCTAGTGAAGCACAACTG
LOC_Os02g12020
OsAffx.24203.1.S1_at--564--2731Chr02:6236957..6236977 (21 bp)
AAGCACAACTGGGATCCGGGTCATT
LOC_Os02g12020
OsAffx.24203.1.S1_at--881--7971Chr02:6236751..6236966 (25 bp)
GGATCCGGGTCATTGCAAACATTAT
LOC_Os02g12020
Target Sequence 
TCCCTCTTGCTGCAGATGACATTATTTCTGCCGTGTGCGCTCGCCACCGATGGCAGAAAGCCTTCCCAGCTACTGATCAT
GGGCAGAGAGATGCATCAAGGCTTGGATCCAACCAAATCCACACGATGTCGTCGAATCCTAGTGCCGCGGCTAGTGAAGC
ACAACTGGGATCCGGGTCATTGCAAACATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis