Browse Element(s) Details


OsAffx.2581.1.S1_at

Description tigr:9630.m01091
TID=OsAffx.2581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Gamma-thionins family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1206011/11proteinase inhibitor Rgpi9, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12020OsAffx.24203.1.S1_at11/112+6236706..6237184hypothetical protein
LOC_Os02g12030OsAffx.24926.1.S1_x_at11/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12030OsAffx.24926.3.S1_at1/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12040OsAffx.24926.3.S1_at11/112+6254346..6256373Leucine Rich Repeat family protein
LOC_Os02g12050OsAffx.11996.1.S1_at10/112+6259006..6260059hypothetical protein
LOC_Os02g12060OsAffx.2581.1.S1_at11/112+6261071..6261623proteinase inhibitor Rgpi9, putative
LOC_Os02g12070OsAffx.11997.1.S1_at11/112+6265995..6267117expressed protein
LOC_Os02g12080OsAffx.11998.1.S1_s_at11/112+6268374..6269146expressed protein
LOC_Os02g12090Os.47959.1.S1_at5/112+6270427..6271229hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_x_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.4.S1_at2/112+6274686..6279131hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0030414molecular_functionprotease inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2581.1.S1_at--840--1671Chr02:6261213..6261237 (25 bp)
AGCCGAGCAGCCATTTCAAGGGGTT
LOC_Os02g12060
OsAffx.2581.1.S1_at--648--6631Chr02:6261191..6261215 (25 bp)
GTTGTGCTTGCGGTCGCAGAACTGC
LOC_Os02g12060
OsAffx.2581.1.S1_at--15--4131Chr02:6261177..6261201 (25 bp)
CGCAGAACTGCGACAACGAGTGCAT
LOC_Os02g12060
OsAffx.2581.1.S1_at--882--2551Chr02:6261172..6261196 (25 bp)
AACTGCGACAACGAGTGCATGCTGG
LOC_Os02g12060
OsAffx.2581.1.S1_at--143--1871Chr02:6261162..6261186 (25 bp)
ACGAGTGCATGCTGGAGGGCTACAT
LOC_Os02g12060
OsAffx.2581.1.S1_at--514--3911Chr02:6261151..6261175 (25 bp)
CTGGAGGGCTACATGGACGGCAAGT
LOC_Os02g12060
OsAffx.2581.1.S1_at--1025--7331Chr02:6261128..6261152 (25 bp)
GTGCAAGTACTTGACTCGACGCTGC
LOC_Os02g12060
OsAffx.2581.1.S1_at--50--2851Chr02:6261124..6261148 (25 bp)
AAGTACTTGACTCGACGCTGCATCT
LOC_Os02g12060
OsAffx.2581.1.S1_at--898--9871Chr02:6261121..6261145 (25 bp)
TACTTGACTCGACGCTGCATCTGCT
LOC_Os02g12060
OsAffx.2581.1.S1_at--583--3791Chr02:6261114..6261138 (25 bp)
CTCGACGCTGCATCTGCTCCATGGA
LOC_Os02g12060
OsAffx.2581.1.S1_at--390--9491Chr02:6261102..6261126 (25 bp)
TCTGCTCCATGGAGTGCGCCACCAT
LOC_Os02g12060
Target Sequence 
AGCCGAGCAGCCATTTCAAGGGGTTGTGCTTGCGGTCGCAGAACTGCGACAACGAGTGCATGCTGGAGGGCTACATGGAC
GGCAAGTGCAAGTACTTGACTCGACGCTGCATCTGCTCCATGGAGTGCGCCACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis