Browse Element(s) Details


Os.47963.1.S1_at

Description gb:AK065754.1
DB_XREF= gi:32975772
TID=Os.47963.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038D14, full insert sequence.
FL= gb:AK065754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2835011/11CDK-activating kinase assembly factor MAT1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28320OsAffx.7233.1.S1_at11/1111+15789429..15790234hypothetical protein
LOC_Os11g28330OsAffx.31180.1.S1_at11/1111+15793308..15795195hypothetical protein
LOC_Os11g28340Os.16375.1.S1_at11/1111+15804006..15807788ER lumen protein retaining receptor, putative, expressed
LOC_Os11g28340Os.22994.1.S1_at1/1111+15804006..15807788ER lumen protein retaining receptor, putative, expressed
LOC_Os11g28350Os.47963.1.S1_at11/1111+15807906..15810405CDK-activating kinase assembly factor MAT1 family protein, expressed
LOC_Os11g28360Os.54773.1.S1_at11/1111+15815169..15819625Ubiquitin carboxyl-terminal hydrolase 5, putative, expressed
LOC_Os11g28370OsAffx.19050.1.S1_at11/1111+15834004..15836835hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47963.1.S1_at--921--9311Chr11:15808459..15808483 (25 bp)
TCCCAGGGCATTAGCAGCAGCGCAG
LOC_Os11g28350
Os.47963.1.S1_at--457--3391Chr11:15808442..15808466 (25 bp)
CAGCGCAGGAGTTCAGGGCCAGTAT
LOC_Os11g28350
Os.47963.1.S1_at--55--6751Chr11:15808353..15808377 (25 bp)
GTTCATCGGATCCACTTCAGGGAGA
LOC_Os11g28350
Os.47963.1.S1_at--156--8191Chr11:15808241..15808265 (25 bp)
GGAAGCGTTCAGCAGCATATTCATC
LOC_Os11g28350
Os.47963.1.S1_at--666--5051Chr11:15808199..15808223 (25 bp)
GCAGCAATACCTTTGTCCGAAGGAT
LOC_Os11g28350
Os.47963.1.S1_at--1102--511Chr11:15808161..15808185 (25 bp)
ATCGCAGCCTTTCGGACGACTGAAA
LOC_Os11g28350
Os.47963.1.S1_at--1155--5731Chr11:15808115..15808139 (25 bp)
GACTGGCTATGGTCCAATTCTGAAT
LOC_Os11g28350
Os.47963.1.S1_at--673--6591Chr11:15808074..15808098 (25 bp)
GATTGAGACCGATCAGCGCCAAGTG
LOC_Os11g28350
Os.47963.1.S1_at--1149--3211Chr11:15808055..15808079 (25 bp)
CAAGTGGCCTGCTGATTGGAAAGAT
LOC_Os11g28350
Os.47963.1.S1_at--830--4991Chr11:15808006..15808030 (25 bp)
GCATGTTGCTGCATCTATTCATAGC
LOC_Os11g28350
Os.47963.1.S1_at--412--6731Chr11:15807918..15807942 (25 bp)
GTTCTCTCTATGATGCAGTGCTTTG
LOC_Os11g28350
Target Sequence 
TCCCAGGGCATTAGCAGCAGCGCAGGAGTTCAGGGCCAGTATGCGCCTGCTGCTGTTGGGATGTCTCAGCCCCGGCCGAC
AGGTATGGCCCCCCAACCAATCGGCGGTTCATCGGATCCACTTCAGGGAGACGATGAGGAGACCATGAGATTACGAGCAG
AGCGAGGAGCTCGAGCAGGTGGATGGACTATCGAAATGGGCAAGAGAANAGCACTAGAGGAAGCGTTCAGCAGCATATTC
ATCTGATGATCAGATTAGATGCAGCAATACCTTTGTCCGAAGGATACCTGATGAACTCATCGCAGCCTTTCGGACGACTG
AAAGATGTTTTCTGCTACAAATATGACTGGCTATGGTCCAATTCTGAATTTTTAAGTATAGTGAAGATTGAGACCGATCA
GCGCCAAGTGGCCTGCTGATTGGAAAGATCATCACTTTGCAAGCAGTATAGTTGCATGTTGCTGCATCTATTCATAGCAT
GAATGTGGTGTTTTTTGCCCTTGTAAANCTCTGGGAAAGATTTTGATACTGAGAGTNCGTCTGTTCTCTCTATGATGCAG
TGCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis