Browse Element(s) Details


Os.47964.1.S1_at

Description gb:AK064755.1
DB_XREF= gi:32974773
TID=Os.47964.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-G03, full insert sequence.
FL= gb:AK064755.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0926011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08840NANA4+4894351..4894837hypothetical protein
LOC_Os04g09260Os.47964.1.S1_at11/114+4904092..4905546Transferase family protein, expressed
LOC_Os04g09260OsAffx.20808.1.S1_x_at1/114+4904092..4905546Transferase family protein, expressed
LOC_Os04g09270OsAffx.8244.1.S1_at3/114+4908424..4911340retrotransposon protein, putative, unclassified
LOC_Os04g09284NANA4+4911970..4918176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09300Os.50463.1.S1_at10/114+4921901..4922499expressed protein
LOC_Os04g09310Os.10827.1.S1_x_at6/114+4924504..4928088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g09310Os.46055.2.S1_x_at3/114+4924504..4928088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g09310OsAffx.18122.1.S1_x_at1/114+4924504..4928088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g09320NANA4+4928709..4929095hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47964.1.S1_at--99--1911Chr04:4904618..4904642 (25 bp)
ACGTGCGGAAGCACGTCGGAGCCAA
LOC_Os04g09260
Os.47964.1.S1_at--509--9651Chr04:4904465..4904489 (25 bp)
TCAGCACCAAGACGCTTGGGCTCGA
LOC_Os04g09260
Os.47964.1.S1_at--852--7371Chr04:4904322..4904346 (25 bp)
GTGATCCCCTACTCGGAGGTGAAGA
LOC_Os04g09260
Os.47964.1.S1_at--421--4251Chr04:4904271..4904295 (25 bp)
CCGTGCTCGATGATGGACGGCCATG
LOC_Os04g09260
Os.47964.1.S1_at--879--7291Chr04:4904227..4904251 (25 bp)
GTGCGTAACAGACGAACACCTCGAG
LOC_Os04g09260
Os.47964.1.S1_at--161--6711Chr04:4904200..4904224 (25 bp)
GTTCCGGGCACAATTGGCGAGGCTC
LOC_Os04g09260
Os.47964.1.S1_at--735--3171Chr04:4904189..4904213 (25 bp)
AATTGGCGAGGCTCTAGTGATCTGC
LOC_Os04g09260
Os.47964.1.S1_at--940--3751Chr04:4904178..4904202 (25 bp)
CTCTAGTGATCTGCCCTATTTCAAA
LOC_Os04g09260
Os.47964.1.S1_at--383--4551Chr04:4904166..4904190 (25 bp)
GCCCTATTTCAAAGAGTATCCTAAA
LOC_Os04g09260
Os.47964.1.S1_at--834--6071Chr04:4904153..4904177 (25 bp)
GAGTATCCTAAAGCGATTTCAAATT
LOC_Os04g09260
Os.47964.1.S1_at--703--6471Chr04:4904094..4904118 (25 bp)
GATACTTTTTATGTCTTTGCTCCAG
LOC_Os04g09260
Target Sequence 
ACGTGCGGAAGCACGTCGGAGCCAAGGACGGGTACTACGGCAACTGCATCATGTCGCAGGTGGTGGTCGCCACGGCCGAC
GCGGTGGCGAACGGCGACGTCGTCGACTTGGTGAAGCTGATCAAGGACGCCAAGGAGCGGATCCCGGTGCTCCTCAGCAC
CAAGACGCTTGGGCTCGACGACAGCGGCGGCGGCGAGCTCGTCGCCGCGCTGTGCGGGTACGGCGCGCTGTACGCGTCGA
GCTGGGCGGGGCTCGGGCTCGACGGCGTCGACTTCGGCGGCGGGAGGCCGGCGCGGGTGATCCCCTACTCGGAGGTGAAG
ATGCTGCCGTCCATCTCCCCGGGCGCGCCGTGCTCGATGATGGACGGCCATGGCGTCAACGTGGTGGCGTCGTGCGTAAC
AGACGAACACCTCGAGGGGTTCCGGGCACAATTGGCGAGGCTCTAGTGATCTGCCCTATTTCAAAGAGTATCCTAAAGCG
ATTTCAAATTTTCAAATCTTTACTTTTATGAATTAAGTTTTGCAGATACTTTTTATGTCTTTGCTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis