Browse Element(s) Details


Os.47971.1.A1_at

Description gb:AK063781.1
DB_XREF= gi:32973799
TID=Os.47971.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D07, full insert sequence.
FL= gb:AK063781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4935011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49300Os.5739.1.S1_at10/115+28206568..28210000NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os05g49310OsAffx.27380.1.S1_at11/115+28213403..28215056Transcription factor MYB21, putative
LOC_Os05g49320OsAffx.4662.1.S1_at11/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49320Os.7971.1.S1_x_at1/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49330NANA5+28217863..28218222hypothetical protein
LOC_Os05g49340NANA5+28221357..28221863hypothetical protein
LOC_Os05g49350Os.47971.1.A1_at11/115+28223817..28224783expressed protein
LOC_Os05g49360NANA5+28226592..28227075hypothetical protein
LOC_Os05g49370Os.50975.1.S1_at11/115+28227633..28228661expressed protein
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47971.1.A1_at--900--3951Chr05:28224186..28224210 (25 bp)
CGGAGACGTACTGCCTGTGGTCGCC
LOC_Os05g49350
Os.47971.1.A1_at--176--3931Chr05:28224225..28224249 (25 bp)
CGGCGGTTTCTAACTCTCCGGCGAG
LOC_Os05g49350
Os.47971.1.A1_at--427--1231Chr05:28224333..28224357 (25 bp)
AGTTCGTGTTCTTGAGCTCGGGCTC
LOC_Os05g49350
Os.47971.1.A1_at--628--9431Chr05:28224350..28224374 (25 bp)
TCGGGCTCCGACGTCCGTAGTAAGG
LOC_Os05g49350
Os.47971.1.A1_at--730--7211Chr05:28224472..28224496 (25 bp)
GTCGTTCCTCCCGTACAAGCAGGAT
LOC_Os05g49350
Os.47971.1.A1_at--513--9311Chr05:28224480..28224504 (25 bp)
TCCCGTACAAGCAGGATCTCGTCGG
LOC_Os05g49350
Os.47971.1.A1_at--823--4831Chr05:28224537..28224561 (25 bp)
GCTACCACCCGTTCTAACGTATTGT
LOC_Os05g49350
Os.47971.1.A1_at--554--6871Chr05:28224555..28224579 (25 bp)
GTATTGTAGCGTTCTTTCTCGCTGA
LOC_Os05g49350
Os.47971.1.A1_at--854--9551Chr05:28224567..28224591 (25 bp)
TCTTTCTCGCTGATCGTTTGCTTAA
LOC_Os05g49350
Os.47971.1.A1_at--473--6391Chr05:28224578..28224602 (25 bp)
GATCGTTTGCTTAATTAATTCCTTA
LOC_Os05g49350
Os.47971.1.A1_at--153--1171Chr05:28224622..28224646 (25 bp)
AGTCATGGTGTGACTTCGGATTGCC
LOC_Os05g49350
Target Sequence 
CGGAGACGTACTGCCTGTGGTCGCCCGGATCACCCGCGCCGGCGGTTTCTAACTCTCCGGCGAGGTGCCAGAAGAGCGGC
TCGACCGGGTCGGTCCTCCGGTGGCGGCAGCGGCTCATCGGGCGGAGCCACAGCGACGGGAAGGAGAAGTTCGTGTTCTT
GAGCTCGGGCTCCGACGTCCGTAGTAAGGGGAGGACGACCACGACGTCGCGCGGCGATGCCGGTGGCCGTGGCGGCGGCT
GGAGATATTACGCGAGTGGAGGCGGCAATGGCGGTGGCCGGAGGCCGTCGTTCCTCCCGTACAAGCAGGATCTCGTCGGC
TTGTTCGCCAACGCCGGCGCGTTCCGCCGGAGCTACCACCCGTTCTAACGTATTGTAGCGTTCTTTCTCGCTGATCGTTT
GCTTAATTAATTCCTTAATTATATATATTTTTGTCAAGTCATGGTGTGACTTCGGATTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47971.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis