Browse Element(s) Details


Os.47982.1.A1_at

Description gb:AK058355.1
DB_XREF= gi:32968373
TID=Os.47982.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-E11, full insert sequence.
FL= gb:AK058355.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0826011/11ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08240OsAffx.1958.1.S1_at11/111+4019948..4020244hypothetical protein
LOC_Os01g08250NANA1+4021657..4027391retrotransposon protein, putative, unclassified
LOC_Os01g08260Os.47982.1.A1_x_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08260Os.47982.1.A1_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08260Os.47982.2.S1_x_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08270Os.50272.1.S1_s_at11/111+4048683..4054510aminotransferase class I and II family protein, putative, expressed
LOC_Os01g08280Os.25067.1.S1_a_at11/111+4056312..4059990expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47982.1.A1_at--423--10311Chr01:4030740..4030764 (25 bp)
TTTCGTTTCTTCAGAACTGCACGCG
LOC_Os01g08260
Os.47982.1.A1_at--665--4031Chr01:4030737..4030761 (25 bp)
CGTTTCTTCAGAACTGCACGCGTCT
LOC_Os01g08260
Os.47982.1.A1_at--175--10571Chr01:4030734..4030758 (25 bp)
TTCTTCAGAACTGCACGCGTCTCTT
LOC_Os01g08260
Os.47982.1.A1_at--786--5451Chr01:4030727..4030751 (25 bp)
GAACTGCACGCGTCTCTTCTCTCTG
LOC_Os01g08260
Os.47982.1.A1_at--460--9571Chr01:4030713..4030737 (25 bp)
TCTTCTCTCTGTCGTCACGATGAAT
LOC_Os01g08260
Os.47982.1.A1_at--592--9511Chr01:4030708..4030732 (25 bp)
TCTCTGTCGTCACGATGAATTCCTC
LOC_Os01g08260
Os.47982.1.A1_at--958--8711Chr01:4030704..4030728 (25 bp)
TGTCGTCACGATGAATTCCTCCCGG
LOC_Os01g08260
Os.47982.1.A1_at--31--9691Chr01:4030699..4030723 (25 bp)
TCACGATGAATTCCTCCCGGTCACG
LOC_Os01g08260
Os.47982.1.A1_at--335--4251Chr01:4030683..4030707 (25 bp)
CCGGTCACGGGAGATGCTGGAGCTA
LOC_Os01g08260
Os.47982.1.A1_at--739--3411Chr01:4030657..4030681 (25 bp)
CAGAGATCAGAGACCAGCAGAAAAA
LOC_Os01g08260
Os.47982.1.A1_at--817--2291Chr01:4030634..4030658 (25 bp)
AAAGGAGACAAGTGTATAGCTAAGC
LOC_Os01g08260
Target Sequence 
TTTCGTTTCTTCAGAACTGCACGCGTCTCTTCTCTCTGTCGTCACGATGAATTCCTCCCGGTCACGGGAGATGCTGGAGC
TAGCAGAGATCAGAGACCAGCAGAAAAAAGGAGACAAGTGTATAGCTAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47982.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis