Browse Element(s) Details


Os.48006.1.S1_at

Description gb:CR281566
DB_XREF= gi:44668132
DB_XREF=CR281566
CLONE=p546h07p5
TID=Os.48006.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide chain release factor subunit 1 (ERF1) (P0504E02.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7127011/11Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
LOC_Os01g71250Os.28979.2.S1_x_at11/111+41554233..41556655expressed protein
LOC_Os01g71250Os.28979.1.S1_at11/111+41554233..41556655expressed protein
LOC_Os01g71256Os.33291.1.S1_a_at10/111+41557703..41562435expressed protein
LOC_Os01g71262Os.55362.1.S1_at11/111+41563261..41565644expressed protein
LOC_Os01g71270Os.48006.1.S1_at11/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71270Os.12402.2.S1_x_at1/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71280Os.11390.1.S1_at10/111+41572437..41576747Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g71300Os.57405.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.57001.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.50480.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.18519.1.S1_at10/111+41578082..41599153Esterase D, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006415biological_processtranslational termination
GO:0018444cellular_componenttranslation release factor complex
GO:0003747molecular_functiontranslation release factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48006.1.S1_at--593--7991Chr01:41570233..41570257 (25 bp)
GGATGATACGATGTCAGCACTTGAA
LOC_Os01g71270
Os.48006.1.S1_at--549--3151Chr01:41570321..41570345 (25 bp)
AATTCTGTCACTGGAGAAACTACGG
LOC_Os01g71270
Os.48006.1.S1_at--243--7051Chr01:41570345..41570369 (25 bp)
GTAAAGCACCTCAACAAGGCACAGG
LOC_Os01g71270
Os.48006.1.S1_at--568--5151Chr01:41570382..41570406 (25 bp)
GCAACTTCCGAGATAAGGCGACTTC
LOC_Os01g71270
Os.48006.1.S1_at--760--8371Chr01:41570398..41570422 (25 bp)
GGCGACTTCTGCAGAACTGGAGGTA
LOC_Os01g71270
Os.48006.1.S1_at--538--291Chr01:41570423..41570447 (25 bp)
ATAGAAAAGACCTTGTTGCTCGAGT
LOC_Os01g71270
Os.48006.1.S1_at--736--5191Chr01:41570467..41570491 (25 bp)
GCAATTTGGTTGCAGCCTAGAGTTT
LOC_Os01g71270
Os.48006.1.S1_at--812--5071Chr01:41570478..41570502 (25 bp)
GCAGCCTAGAGTTTGTCACGAACAA
LOC_Os01g71270
Os.48006.1.S1_at--618--7671Chr01:41570549..41570573 (25 bp)
GGGATTCTCCGCTATCAGGTTGAGA
LOC_Os01g71270
Os.48006.1.S1_at--821--3191Chr01:41570575..41570599 (25 bp)
CAATGCTTACGAAGACTTGTCTGAT
LOC_Os01g71270
Os.48006.1.S1_at--89--3131Chr01:41570632..41570656 (25 bp)
AATTGAAACTTCAGTGATTCCGGTC
LOC_Os01g71270
Target Sequence 
GGATGATACGATGTCAGCACTTGAAATGGGNGCNGTTGAGACACTGATTGTGTGGGAAAATCTTGATATCAACCGATATG
TTTTGAAAAATTCTGTCACTGGAGAAACTACGGTAAAGCACCTCAACAAGGCACAGGAGACAGATCAGAGCAACTTCCGA
GATAAGGCGACTTCTGCAGAACTGGAGGTAATAGAAAAGACCTTGTTGCTCGAGTGGTTTGCAGAAAATTACCGGCAATT
TGGTTGCAGCCTAGAGTTTGTCACGAACAAGTCGCAGGAAGGTTCTCAGTTTGTCAGGGGCTTTGGTGGGATAGGGGGGA
TTCTCCGCTATCAGGTTGAGATCAATGCTTACGAAGACTTGTCTGATGAGGAGTACGATGAAGACTACGAATAGCAATCA
ATTGAAACTTCAGTGATTCCGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis