Browse Element(s) Details


Os.4807.1.S1_at

Description gb:AK100906.1
DB_XREF= gi:32986115
TID=Os.4807.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132D04, full insert sequence.
FL= gb:AK100906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5420011/11diacylglycerol kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54150NANA4+32041021..32044040retrotransposon protein, putative, unclassified
LOC_Os04g54160NANA4+32045225..32048856retrotransposon protein, putative, unclassified
LOC_Os04g54170NANA4+32052191..32052791hypothetical protein
LOC_Os04g54180OsAffx.14409.1.S1_at11/114+32054294..32057778D-mannose binding lectin family protein, expressed
LOC_Os04g54190Os.17555.1.S1_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54190OsAffx.26598.1.S1_x_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54200Os.4807.1.S1_at11/114+32067611..32072391diacylglycerol kinase, putative, expressed
LOC_Os04g54210Os.55270.1.S1_s_at11/114+32075929..32076594expressed protein
LOC_Os04g54220OsAffx.4174.1.S1_at10/114+32076784..32077471hypothetical protein
LOC_Os04g54230OsAffx.14410.1.S1_s_at11/114+32078507..32079062expressed protein
LOC_Os04g54230Os.9913.1.S1_at8/114+32078507..32079062expressed protein
LOC_Os04g54240OsAffx.14412.2.S1_s_at11/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54240Os.9445.1.S1_at8/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54250OsAffx.8980.1.S1_at5/114+32085753..32087552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54260NANA4+32088752..32094910transposon protein, putative, unclassified
LOC_Os04g54270NANA4+32095550..32098786transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0004143molecular_functiondiacylglycerol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4807.1.S1_at--433--10731Chr04:32071739..32071763 (25 bp)
TTGCTTGCCCCTAATGGCCATGGAA
LOC_Os04g54200
Os.4807.1.S1_at--930--8451Chr04:32071753..32071777 (25 bp)
TGGCCATGGAACTCGTCTAGCACAG
LOC_Os04g54200
Os.4807.1.S1_at--977--6311Chr04:32071961..32071985 (25 bp)
GATGACACCGTGGTCGTCGAGATCT
LOC_Os04g54200
Os.4807.1.S1_at--27--6271Chr04:32072059..32072083 (25 bp)
GATGTGCTGTAGCAACCACGACGAC
LOC_Os04g54200
Os.4807.1.S1_at--774--2831Chr04:32072135..32072159 (25 bp)
AAGTTTGGTGCAGCTGATACGTTCA
LOC_Os04g54200
Os.4807.1.S1_at--686--6471Chr04:32072150..32072174 (25 bp)
GATACGTTCAAGTTCCCTGATGAGG
LOC_Os04g54200
Os.4807.1.S1_at--714--7911Chr04:32072173..32072197 (25 bp)
GGTTGATGTTGCTCACCTTAGCTGA
LOC_Os04g54200
Os.4807.1.S1_at--1032--9631Chr04:32072224..32072248 (25 bp)
TCAGAATGTTCGCTACTACTGTTAG
LOC_Os04g54200
Os.4807.1.S1_at--423--1971Chr04:32072241..32072265 (25 bp)
ACTGTTAGCGATACTGCCTTTTTGG
LOC_Os04g54200
Os.4807.1.S1_at--1059--6811Chr04:32072285..32072309 (25 bp)
GTTTATTAGTTATCAGCCCTGTGTA
LOC_Os04g54200
Os.4807.1.S1_at--209--3891Chr04:32072303..32072327 (25 bp)
CTGTGTAGATTCGACCGGCTGTATT
LOC_Os04g54200
Target Sequence 
TTGCTTGCCCCTAATGGCCATGGAACTCGTCTAGCACAGGCCCATAGAATCCGGTTCNAGTTCCACAAAGGAGCAGCCGA
GCANACGTTCATGAGGATCGATGGGGAGCCATGGAAGCAGCCTCTTCCCAAGGACGATGACACCGTGGTCGTCGAGATCT
CTCACCTCCGTCAGGTCACCATGCTCGCCAGCGACCCGTGCAAGTCGAAGAGCGTCAANCGACCCCTCGTCGCCGATGTG
CTGTAGCAACCACGACGACGACGAGCGCAACAGCTTGGAGGACGAAGATGAGTGGGAGGAGGGGAGGAAGAAGTTTGGTG
CAGCTGATACGTTCAAGTTCCCTGATGAGGTTGATGTTGCTCACCTTAGCTGAGCTATAAGTGATTCAGAGTTCAGATTT
CAGAATGTTCGCTACTACTGTTAGCGATACTGCCTTTTTGGGGGTTTATATATACTACTAGTTTATTAGTTATCAGCCCT
GTGTAGATTCGACCGGCTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis