Browse Element(s) Details


OsAffx.14409.1.S1_at

Description tigr:9632.m05263
TID=OsAffx.14409.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5418011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54130OsAffx.26596.1.S1_at11/114+32029886..32033965receptor-like kinase, putative, expressed
LOC_Os04g54140Os.54694.1.S1_at11/114+32035059..32039199D-mannose binding lectin family protein, expressed
LOC_Os04g54150NANA4+32041021..32044040retrotransposon protein, putative, unclassified
LOC_Os04g54160NANA4+32045225..32048856retrotransposon protein, putative, unclassified
LOC_Os04g54170NANA4+32052191..32052791hypothetical protein
LOC_Os04g54180OsAffx.14409.1.S1_at11/114+32054294..32057778D-mannose binding lectin family protein, expressed
LOC_Os04g54190Os.17555.1.S1_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54190OsAffx.26598.1.S1_x_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54200Os.4807.1.S1_at11/114+32067611..32072391diacylglycerol kinase, putative, expressed
LOC_Os04g54210Os.55270.1.S1_s_at11/114+32075929..32076594expressed protein
LOC_Os04g54220OsAffx.4174.1.S1_at10/114+32076784..32077471hypothetical protein
LOC_Os04g54230OsAffx.14410.1.S1_s_at11/114+32078507..32079062expressed protein
LOC_Os04g54230Os.9913.1.S1_at8/114+32078507..32079062expressed protein
LOC_Os04g54240OsAffx.14412.2.S1_s_at11/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54240Os.9445.1.S1_at8/114+32082558..32083390wound induced protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14409.1.S1_at--806--5571Chr04:32055038..32055062 (25 bp)
GAAAGGTGTCGCGTATCTTCACGAA
LOC_Os04g54180
OsAffx.14409.1.S1_at--376--5811Chr04:32054806..32054912 (25 bp)
GACCCTCGTGGTCTCACAAGGTTAT
LOC_Os04g54180
OsAffx.14409.1.S1_at--84--2231Chr04:32054791..32054812 (22 bp)
ACAAGGTTATGCATCTCCGGAGTAC
LOC_Os04g54180
OsAffx.14409.1.S1_at--777--2571Chr04:32054685..32054709 (25 bp)
AACGGCTCAATGCAGACGCTTCTTC
LOC_Os04g54180
OsAffx.14409.1.S1_at--239--6331Chr04:32054494..32054518 (25 bp)
GATGCAGAGCTCCTGTACGATCTAG
LOC_Os04g54180
OsAffx.14409.1.S1_at--29--9951Chr04:32054479..32054503 (25 bp)
TACGATCTAGAACGGTGCATCCACA
LOC_Os04g54180
OsAffx.14409.1.S1_at--744--2091Chr04:32054457..32054481 (25 bp)
ACATCGGGCTTCTTTGCATCCAGGA
LOC_Os04g54180
OsAffx.14409.1.S1_at--818--251Chr04:32054421..32054445 (25 bp)
ATAGGCCGACCATGTCCGAAATCGT
LOC_Os04g54180
OsAffx.14409.1.S1_at--161--971Chr04:32054380..32054404 (25 bp)
AGGACGTCGCAGATGGAGCAGCCCA
LOC_Os04g54180
OsAffx.14409.1.S1_at--925--1371Chr04:32054353..32054377 (25 bp)
AGACCGACACTTGACAGCAGAGCCG
LOC_Os04g54180
OsAffx.14409.1.S1_at--348--611Chr04:32054326..32054350 (25 bp)
ATGCGTCCGCTTCGTCAGAGTGATG
LOC_Os04g54180
Target Sequence 
GAAAGGTGTCGCGTATCTTCACGAAGGACCAGACGGGAGTGTAATCCACAGGGATCTCAAGCTGAGCAACATTCTTCTAG
ACGACGAATTGAAGCCTAAGATTGCAGACTTTGGCACCGCCAAGCTGTTCGTCGCCGATCAGTCAGGCCAGACCCTCGTG
GTCTCACAAGGTTATGCATCTCCGGAGTACGCGTTACGAGACGAGATGACGCTCAAGTGCGACGTCTACAGCTTCGGAGT
CGTCCTCCTGGAGACGCTCAGCGGCGTTCGCAACGGCTCAATGCAGACGCTTCTTCCACAGGCATGGAGGTTGTGGGAAC
AGGGCAACCTCATGGACCTCCTTGACCCGGCAATGGCGAGGCCTGCACCCGACGATGCAGAGCTCCTGTACGATCTAGAA
CGGTGCATCCACATCGGGCTTCTTTGCATCCAGGACATGGCGGACGATAGGCCGACCATGTCCGAAATCGTCGCCATGCT
GACGAGCAGGACGTCGCAGATGGAGCAGCCCAAGAGACCGACACTTGACAGCAGAGCCGCCATGCGTCCGCTTCGTCAGA
GTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis