Browse Element(s) Details


Os.54694.1.S1_at

Description gb:AK106486.1
DB_XREF= gi:32991695
TID=Os.54694.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H03, full insert sequence.
FL= gb:AK106486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5414011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54080OsAffx.14405.2.S1_at11/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54080OsAffx.14405.1.S1_at3/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54090OsAffx.14406.1.S1_at11/114+32015634..32015958Rapid ALkalinization Factor family protein
LOC_Os04g54100OsAffx.26595.1.S1_s_at11/114+32016250..32016636secondary cell wall-related glycosyltransferase family 47, putative
LOC_Os04g54110OsAffx.14407.1.S1_at11/114+32019311..32023465D-mannose binding lectin family protein, expressed
LOC_Os04g54110Os.47968.2.A1_at1/114+32019311..32023465D-mannose binding lectin family protein, expressed
LOC_Os04g54120OsAffx.14408.1.S1_at11/114+32025814..32029115D-mannose binding lectin family protein
LOC_Os04g54130OsAffx.26596.1.S1_at11/114+32029886..32033965receptor-like kinase, putative, expressed
LOC_Os04g54140Os.54694.1.S1_at11/114+32035059..32039199D-mannose binding lectin family protein, expressed
LOC_Os04g54150NANA4+32041021..32044040retrotransposon protein, putative, unclassified
LOC_Os04g54160NANA4+32045225..32048856retrotransposon protein, putative, unclassified
LOC_Os04g54170NANA4+32052191..32052791hypothetical protein
LOC_Os04g54180OsAffx.14409.1.S1_at11/114+32054294..32057778D-mannose binding lectin family protein, expressed
LOC_Os04g54190Os.17555.1.S1_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54190OsAffx.26598.1.S1_x_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54694.1.S1_at--616--6611Chr04:32035681..32035814 (25 bp)
GTTGTGGTTTCACCGGGATACGCAT
LOC_Os04g54140
Os.54694.1.S1_at--453--4971Chr04:32035660..32035996 (25 bp)
GCATCACCGGAGTACGCATGGCGAG
LOC_Os04g54140
Os.54694.1.S1_at--107--4891Chr04:32035605..32035629 (25 bp)
GCTTTGGAGTCGTTCTTCTCGAAAC
LOC_Os04g54140
Os.54694.1.S1_at--319--3651Chr04:32035591..32035615 (25 bp)
CTTCTCGAAACCCTTAGCGGACAGA
LOC_Os04g54140
Os.54694.1.S1_at--327--5291Chr04:32035565..32035589 (25 bp)
GAATGGTCCCATGTACAGTCTCCTT
LOC_Os04g54140
Os.54694.1.S1_at--798--8871Chr04:32035425..32035449 (25 bp)
TGATGTCCCTCCTTGACGCGATGAT
LOC_Os04g54140
Os.54694.1.S1_at--857--1071Chr04:32035379..32035403 (25 bp)
AGGGCCTGATCACACCGAGATGGAA
LOC_Os04g54140
Os.54694.1.S1_at--760--9111Chr04:32035266..32035290 (25 bp)
TGCTGACCAGCAAGAGCTCACGGGT
LOC_Os04g54140
Os.54694.1.S1_at--312--5791Chr04:32035156..32035180 (25 bp)
GACGACGATCTCACGTAGTACAACT
LOC_Os04g54140
Os.54694.1.S1_at--94--7891Chr04:32035125..32035149 (25 bp)
GGTTATATATATAGTCCCTCCGTCT
LOC_Os04g54140
Os.54694.1.S1_at--68--7171Chr04:32035104..32035128 (25 bp)
GTCTCTACGCCATTTACTTTACTAA
LOC_Os04g54140
Target Sequence 
GTTGTGGTTTCACCGGGATACGCATCACCGGAGTACGCATGGCGAGGGGAGATGACACTAAAGTGCGATGTCTACAGCTT
TGGAGTCGTTCTTCTCGAAACCCTTAGCGGACAGAGGAATGGTCCCATGTACAGTCTCCTTCCACATGCATGGGAGCTGT
GGGAGCAGGGCAGGGTGATGTCCCTCCTTGACGCGATGATCGGTCTCCCTCTCTCAGTCTCAGGGCCTGATCACACCGAG
ATGGAAGATGAACTGGCGAGGTGCGTGCGGATCGGGCTCCTGTGCGTGCAGGATGCGCCGGAGGAAAGGCCGGCCATGTC
GGCGGTCGTCGCGATGCTGACCAGCAAGAGCTCACGGGTGGATCGTCCCAAGAGGCCAGGGGTTCACGGCGGCAGAAGCA
GGCCACCGTTGCGCGAGTCGGAGCTGCTGGGCGCCACCGACATTGACGACGATCTCACGTAGTACAACTGTACAGGGTTA
TATATATAGTCCCTCCGTCTCTACGCCATTTACTTTACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis