Browse Element(s) Details


Os.47968.2.A1_at

Description gb:AK119388.1
DB_XREF= gi:37989011
TID=Os.47968.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-C04, full insert sequence.
FL= gb:AK119388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g541101/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54050OsAffx.16205.1.S1_at2/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.49232.1.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.45982.1.A1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.18764.1.S1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.23640.3.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54060Os.35344.18.S1_x_at11/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060Os.35344.3.S1_x_at9/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060OsAffx.22940.5.S1_x_at3/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54070OsAffx.14405.1.S1_at11/114+32004052..32007888receptor-like kinase, putative, expressed
LOC_Os04g54070OsAffx.13556.1.S1_x_at1/114+32004052..32007888receptor-like kinase, putative, expressed
LOC_Os04g54080OsAffx.14405.2.S1_at11/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54080OsAffx.14405.1.S1_at3/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54090OsAffx.14406.1.S1_at11/114+32015634..32015958Rapid ALkalinization Factor family protein
LOC_Os04g54100OsAffx.26595.1.S1_s_at11/114+32016250..32016636secondary cell wall-related glycosyltransferase family 47, putative
LOC_Os04g54110OsAffx.14407.1.S1_at11/114+32019311..32023465D-mannose binding lectin family protein, expressed
LOC_Os04g54110Os.47968.2.A1_at1/114+32019311..32023465D-mannose binding lectin family protein, expressed
LOC_Os04g54120OsAffx.14408.1.S1_at11/114+32025814..32029115D-mannose binding lectin family protein
LOC_Os04g54130OsAffx.26596.1.S1_at11/114+32029886..32033965receptor-like kinase, putative, expressed
LOC_Os04g54140Os.54694.1.S1_at11/114+32035059..32039199D-mannose binding lectin family protein, expressed
LOC_Os04g54150NANA4+32041021..32044040retrotransposon protein, putative, unclassified
LOC_Os04g54160NANA4+32045225..32048856retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47968.2.A1_at--380--7931Chr04:31965376..31965400 (25 bp)
GGATTTTCCGAACCTTATAGCTTAT
NONE
Os.47968.2.A1_at--13--2971Chr04:31965233..31965257 (25 bp)
AATGGCAGAGGCTTTCGTAGACAAA
NONE
Os.47968.2.A1_at--1057--7452Chr04:32022876..32022899 (24 bp)
GTGTGTTCAGGACAGCCCAAATGCC
LOC_Os04g54110
Os.47968.2.A1_at--1081--9191Chr04:31965128..31965152 (25 bp)
TGCCAGGCCGCATATGTCATTAGTT
NONE
Os.47968.2.A1_at--589--5391Chr04:31965062..31965086 (25 bp)
GAAGCAGCCTATATATTTCGTGCAA
NONE
Os.47968.2.A1_at--358--351Chr04:31964991..31965015 (25 bp)
ATAACGCGAGCCTGACAGCGCTAGA
NONE
Os.47968.2.A1_at--1001--5271Chr04:31964968..31964992 (25 bp)
GAAGGCCGCTAGACTGTAAGAGATT
NONE
Os.47968.2.A1_at--352--1531Chr04:31964934..31964958 (25 bp)
AGCAGTTTCTGCAGTTGTACATTAC
NONE
Os.47968.2.A1_at--558--51Chr04:31964855..31964879 (25 bp)
ATTGATGTACCCCTAATCCGATTTG
NONE
Os.47968.2.A1_at--934--8571Chr04:31964805..31964829 (25 bp)
TGGTTCCATGTGCAATTCACTCATG
NONE
Os.47968.2.A1_at--561--8831Chr04:31964741..31964765 (25 bp)
TGATTTGATCACCTGCTATGCTTGT
NONE
Target Sequence 
GGATTTTCCGAACCTTATAGCTTATGCATGGAACTTGTGGAAAGATGGAATGGCAGAGGCTTTCGTAGACAAAATGGTTC
TGGAGAGCTGTTTGCTTAATGAAGTATTGCAATGCATCCATATTGGACTATTGTGTGTTCAGGACAGCCCAAATGCCAGG
CCGCATATGTCATTAGTTGTGTCGATGCTGGACAACGAGGACATGGCACGCCCAATACCGAAGCAGCCTATATATTTCGT
GCAAAGGCATTACGACGAAGAAGAAAGACAAGGCTCGGAAAGTTCCGTTAATAACGCGAGCCTGACAGCGCTAGAAGGCC
GCTAGACTGTAAGAGATTAAACTCTCAAGCAGTTTCTGCAGTTGTACATTACTACAGTAGGAGCTGAGGTTTATAGATCT
TGTAAAAGAATGCATTGCATAAGCAGATTGATGTACCCCTAATCCGATTTGCAACATATGGGTAAAAATAAATAAGTGGT
TCCATGTGCAATTCACTCATGAGATGTTGAAAAGAATGACTTGCACAGGCAGTTTTGTTGTGATTTGATCACCTGCTATG
CTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47968.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis