Browse Element(s) Details


OsAffx.13556.1.S1_x_at

Description tigr:9631.m05902
TID=OsAffx.13556.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5995011/11receptor-like kinase, putative
LOC_Os04g540701/11receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59880OsAffx.25777.1.S1_at11/113+34027920..34028721expressed protein
LOC_Os03g59894Os.38395.4.S1_x_at3/113+34032264..34035601Transposable element protein, putative, MuDR
LOC_Os03g59910NANA3+34037206..34037611hypothetical protein
LOC_Os03g59920Os.45173.1.S1_x_at2/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59920Os.10731.2.A1_at1/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59920Os.38764.1.S1_x_at1/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59930NANA3+34044331..34044789hypothetical protein
LOC_Os03g59940NANA3+34047012..34047521hypothetical protein
LOC_Os03g59950OsAffx.13556.1.S1_at11/113+34051346..34052708receptor-like kinase, putative
LOC_Os03g59950OsAffx.13556.1.S1_x_at11/113+34051346..34052708receptor-like kinase, putative
LOC_Os03g59960NANA3+34054184..34054801transposon protein, putative, Mutator sub-class
LOC_Os03g59970Os.54691.1.S1_x_at2/113+34055685..34057968hypothetical protein
LOC_Os03g59980NANA3+34058949..34060111Zinc knuckle family protein
LOC_Os03g59990OsAffx.13555.1.S1_at11/113+34062669..34063199hypothetical protein
LOC_Os03g60000Os.10849.1.S1_at3/113+34064674..34067148SPFH domain/Band 7 family protein
LOC_Os03g60010NANA3+34071366..34074698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g60020Os.47463.1.S1_x_at6/113+34076279..34081459transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g60020Os.14491.2.S1_x_at4/113+34076279..34081459transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13556.1.S1_x_at--663--8851Chr03:34052497..34052521 (25 bp)
TGATGGACACGAGAAGGCTACTGGA
LOC_Os03g59950
OsAffx.13556.1.S1_x_at--1135--5291Chr03:34052509..34052533 (25 bp)
GAAGGCTACTGGACAACATCTCGTG
LOC_Os03g59950
OsAffx.13556.1.S1_x_at--297--8531Chr03:34052518..34052542 (25 bp)
TGGACAACATCTCGTGGCGCAGTGC
LOC_Os03g59950
OsAffx.13556.1.S1_x_at--165--471Chr03:34052526..34052550 (25 bp)
ATCTCGTGGCGCAGTGCCGACAAGA
LOC_Os03g59950
OsAffx.13556.1.S1_x_at--629--8471Chr03:34052532..34052556 (25 bp)
TGGCGCAGTGCCGACAAGAAGTATC
LOC_Os03g59950
OsAffx.13556.1.S1_x_at--327--7291Chr03:34052539..34052563 (25 bp)
GTGCCGACAAGAAGTATCGCACGGG
LOC_Os03g59950
OsAffx.13556.1.S1_x_at--135--7011Chr03:34052609..34052633 (25 bp)
GTACTCGTCCATGTTTGCGAACCAG
LOC_Os03g59950
OsAffx.13556.1.S1_x_at--991--9132Chr03:34052624..34052648 (25 bp)
TGCGAACCAGGTGGTGGTCAAGCCT
LOC_Os03g59950
OsAffx.13556.1.S1_x_at--1152--7811Chr03:34052639..34052663 (25 bp)
GGTCAAGCCTGACGGAGATCGCCTA
LOC_Os03g59950
OsAffx.13556.1.S1_x_at--960--2651Chr03:34052643..34052667 (25 bp)
AAGCCTGACGGAGATCGCCTATGCC
LOC_Os03g59950
OsAffx.13556.1.S1_x_at--194--5751Chr03:34052649..34052673 (25 bp)
GACGGAGATCGCCTATGCCTTCTCC
LOC_Os03g59950
Target Sequence 
TGATGGACACGAGAAGGCTACTGGACAACATCTCGTGGCGCAGTGCCGACAAGAAGTATCGCACGGGGCAGTGGAACGGG
ATGTGGTTCAGCGGCGTCCCGGAGATGGCGTCGTACTCGTCCATGTTTGCGAACCAGGTGGTGGTCAAGCCTGACGGAGA
TCGCCTATGCCTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13556.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis