Browse Element(s) Details


OsAffx.13555.1.S1_at

Description tigr:9631.m05906
TID=OsAffx.13555.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5999011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59920Os.45173.1.S1_x_at2/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59920Os.10731.2.A1_at1/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59920Os.38764.1.S1_x_at1/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59930NANA3+34044331..34044789hypothetical protein
LOC_Os03g59940NANA3+34047012..34047521hypothetical protein
LOC_Os03g59950OsAffx.13556.1.S1_at11/113+34051346..34052708receptor-like kinase, putative
LOC_Os03g59950OsAffx.13556.1.S1_x_at11/113+34051346..34052708receptor-like kinase, putative
LOC_Os03g59960NANA3+34054184..34054801transposon protein, putative, Mutator sub-class
LOC_Os03g59970Os.54691.1.S1_x_at2/113+34055685..34057968hypothetical protein
LOC_Os03g59980NANA3+34058949..34060111Zinc knuckle family protein
LOC_Os03g59990OsAffx.13555.1.S1_at11/113+34062669..34063199hypothetical protein
LOC_Os03g60000Os.10849.1.S1_at3/113+34064674..34067148SPFH domain/Band 7 family protein
LOC_Os03g60010NANA3+34071366..34074698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g60020Os.47463.1.S1_x_at6/113+34076279..34081459transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g60020Os.14491.2.S1_x_at4/113+34076279..34081459transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g60030NANA3+34081784..34084205transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13555.1.S1_at--408--9291Chr03:34062835..34062859 (25 bp)
TCCCGTATTACTACCCCGAAGCATG
LOC_Os03g59990
OsAffx.13555.1.S1_at--652--4191Chr03:34062834..34062858 (25 bp)
CCCGTATTACTACCCCGAAGCATGT
LOC_Os03g59990
OsAffx.13555.1.S1_at--345--132Chr03:34062829..34062853 (25 bp)
ATTACTACCCCGAAGCATGTGGAAA
LOC_Os03g59990
OsAffx.13555.1.S1_at--475--5393Chr03:34062818..34062842 (25 bp)
GAAGCATGTGGAAATTTCGGCAGCA
LOC_Os03g59990
OsAffx.13555.1.S1_at--635--1533Chr03:34062816..34062840 (25 bp)
AGCATGTGGAAATTTCGGCAGCAAA
LOC_Os03g59990
OsAffx.13555.1.S1_at--778--8493Chr03:34062810..34062834 (25 bp)
TGGAAATTTCGGCAGCAAAACACGA
LOC_Os03g59990
OsAffx.13555.1.S1_at--825--10612Chr03:34062803..34062827 (25 bp)
TTCGGCAGCAAAACACGAAACACGC
LOC_Os03g59990
OsAffx.13555.1.S1_at--639--1472Chr03:34062797..34062821 (25 bp)
AGCAAAACACGAAACACGCCGCACG
LOC_Os03g59990
OsAffx.13555.1.S1_at--429--12Chr03:34062794..34062818 (25 bp)
AAAACACGAAACACGCCGCACGGCG
LOC_Os03g59990
OsAffx.13555.1.S1_at--230--9113Chr03:34062767..34062791 (25 bp)
TGCTCGCCTGCAACCAGGCCGAGGC
LOC_Os03g59990
OsAffx.13555.1.S1_at--51--1912Chr03:34062725..34062749 (25 bp)
ACGTCGTGGCGCGAGAGCCGCGCTG
LOC_Os03g59990
Target Sequence 
TCCCGTATTACTACCCCGAAGCATGTGGAAATTTCGGCAGCAAAACACGAAACACGCCGCACGGCGCCTGCTCGCCTGCA
ACCAGGCCGAGGCTCGCCACGACCGCCGCGACGTCGTGGCGCGAGAGCCGCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis