Browse Element(s) Details


Os.10849.1.S1_at

Description gb:AK059289.1
DB_XREF= gi:32969307
TID=Os.10849.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E01, full insert sequence.
FL= gb:AK069772.1 gb:AK059289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6249011/11Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os03g600003/11SPFH domain/Band 7 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62420OsAffx.13583.1.S1_at11/113+35295028..35297793expressed protein
LOC_Os03g62430Os.49388.1.S1_at9/113+35299723..35304099Calcium binding EGF domain containing protein, expressed
LOC_Os03g62440NANA3+35304728..35305240hypothetical protein
LOC_Os03g62450Os.10827.1.S1_x_at10/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62450Os.46055.2.S1_x_at6/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.7.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.1.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.2.S1_x_at4/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.5.S1_x_at1/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62470OsAffx.25789.1.S1_at1/113+35316963..35317358No apical meristem protein
LOC_Os03g62480Os.23021.1.S1_at1/113+35319484..35320914UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g62490Os.10849.1.S1_at11/113+35321679..35324125Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os03g62500Os.18526.1.S1_at11/113+35324819..35330993Shaggy-related protein kinase kappa, putative, expressed
LOC_Os03g62510Os.22483.1.A1_s_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62510Os.22483.1.A1_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62516OsAffx.3676.1.S1_at11/113+35340066..35341620hypothetical protein
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10849.1.S1_at--718--4812Chr03:35322210..35322234 (25 bp)
GCTCTCCGACAGATTGAAGCTGCCA
LOC_Os03g62490
Os.10849.1.S1_at--552--7652Chr03:35322185..35322209 (25 bp)
GGGAGATCTCTCACACCATGGCAAG
LOC_Os03g62490
Os.10849.1.S1_at--1026--6971Chr03:35322145..35322169 (25 bp)
GTACCTGGATTCCAAGGACCTCTTG
LOC_Os03g62490
Os.10849.1.S1_at--369--10712Chr03:35322123..35322147 (25 bp)
TTGCTTGGGCTCCAGCAGCTGAATG
LOC_Os03g62490
Os.10849.1.S1_at--113--1252Chr03:35322031..35322055 (25 bp)
AGTTGATCATTGTTGGTTTCTCCAT
LOC_Os03g62490
Os.10849.1.S1_at--803--6152Chr03:35321876..35321900 (25 bp)
GAGGTTATCATTTTTGCTGCTGTAA
LOC_Os03g62490
Os.10849.1.S1_at--662--9392Chr03:35321827..35321851 (25 bp)
TCGATATCTTAGTTGCCATGGCCAC
LOC_Os03g62490
Os.10849.1.S1_at--634--10391Chr03:35321781..35321805 (25 bp)
TTTTGAGTTCGGTCGCTGTAACGCA
LOC_Os03g62490
Os.10849.1.S1_at--583--911Chr03:35321757..35321781 (25 bp)
AGGCTGTGCCTCTAACAGCTGGATT
LOC_Os03g62490
Os.10849.1.S1_at--596--6591Chr03:35321736..35321760 (25 bp)
GATTGCTGCACATGTTTCCTGATTC
LOC_Os03g62490
Os.10849.1.S1_at--116--6851Chr03:35321723..35321747 (25 bp)
GTTTCCTGATTCCTGTGCTAACTAG
LOC_Os03g62490
Target Sequence 
GCTCTCCGACAGATTGAAGCTGCCAGGGAGATCTCTCACACCATGGCAAGCTCAAACAACAAGGTGTACCTGGATTCCAA
GGACCTCTTGCTTGGGCTCCAGCAGCTGAATGTGGACAACAAAAACAAGAAGTGAAACAGTTTCTTGTCATCAGATGATC
ATTACAGTTTCTGATCATCAGTTGATCATTGTTGGTTTCTCCATGGGAGAGTACTTCTAAGAAAATCGCATAGTCTTTAG
CTTATGTCAGAAAAGGTTCTGGTTTAGGAAGTGAGATCAACAGGTGGCATCCTTTTTCATCATTGCATTTGAAGGAGTAC
TCGCAAGTGAAGTGGAGGTTATCATTTTTGCTGCTGTAAAAAAATATAACTTGAATACTCTCTTCGATATCTTAGTTGCC
ATGGCCACTTTGCCAGTTCGTCTTTGTTATTTTGAGTTCGGTCGCTGTAACGCAGGCTGTGCCTCTAACAGCTGGATTGC
TGCACATGTTTCCTGATTCCTGTGCTAACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis