Browse Element(s) Details


Os.18526.1.S1_at

Description gb:AK070062.1
DB_XREF= gi:32980086
TID=Os.18526.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.18526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042K05, full insert sequence.
FL= gb:AK059626.1 gb:AK070062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6250011/11Shaggy-related protein kinase kappa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62430Os.49388.1.S1_at9/113+35299723..35304099Calcium binding EGF domain containing protein, expressed
LOC_Os03g62440NANA3+35304728..35305240hypothetical protein
LOC_Os03g62450Os.10827.1.S1_x_at10/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62450Os.46055.2.S1_x_at6/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.7.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.1.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.2.S1_x_at4/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.5.S1_x_at1/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62470OsAffx.25789.1.S1_at1/113+35316963..35317358No apical meristem protein
LOC_Os03g62480Os.23021.1.S1_at1/113+35319484..35320914UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g62490Os.10849.1.S1_at11/113+35321679..35324125Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os03g62500Os.18526.1.S1_at11/113+35324819..35330993Shaggy-related protein kinase kappa, putative, expressed
LOC_Os03g62510Os.22483.1.A1_s_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62510Os.22483.1.A1_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62516OsAffx.3676.1.S1_at11/113+35340066..35341620hypothetical protein
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18526.1.S1_at--285--3851Chr03:35325721..35325745 (25 bp)
CTGCATGCACCCTTTCTTTGATGAG
LOC_Os03g62500
Os.18526.1.S1_at--256--2411Chr03:35325685..35325709 (25 bp)
AAACACTCGTCTACCTAATGGGCGT
LOC_Os03g62500
Os.18526.1.S1_at--1108--8571Chr03:35325258..35325282 (25 bp)
TGGTTCCCGAGCATGCGAGAAGGCA
LOC_Os03g62500
Os.18526.1.S1_at--67--10491Chr03:35325187..35325211 (25 bp)
TTCGCAGTTTTTCTTCCTGAGGGAA
LOC_Os03g62500
Os.18526.1.S1_at--680--1051Chr03:35325153..35325177 (25 bp)
AGGTGTAGTGGCTTCTATGTGCCCA
LOC_Os03g62500
Os.18526.1.S1_at--954--10111Chr03:35325138..35325162 (25 bp)
TATGTGCCCATCTCAGTGTGGATAA
LOC_Os03g62500
Os.18526.1.S1_at--609--5231Chr03:35325001..35325025 (25 bp)
GAATCTATGCTTCAGGGTTCCAGGC
LOC_Os03g62500
Os.18526.1.S1_at--1147--1051Chr03:35324988..35325012 (25 bp)
AGGGTTCCAGGCTGTGTAACTCCTC
LOC_Os03g62500
Os.18526.1.S1_at--226--3451Chr03:35324963..35324987 (25 bp)
CAGTTCTCTTTGGACTTTGGTTTGA
LOC_Os03g62500
Os.18526.1.S1_at--1029--1111Chr03:35324921..35324945 (25 bp)
AGTGCTTGGTTCAACTTCAGTTCAG
LOC_Os03g62500
Os.18526.1.S1_at--303--7331Chr03:35324844..35324868 (25 bp)
GTGCTTCACCATTCAATACTGTCGA
LOC_Os03g62500
Target Sequence 
CTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCA
ACTTCAGAACACAAGAGNTAAATGGCATCCCTCCAGAAGCCATCGAACGTNTGGTTCCCGAGCATGCGAGAAGGCAGAGT
TTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGT
GTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATG
TGATGTGAGTGAGGTTGGAGAAGAANAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTT
CAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTC
AACTTCAGTTCAGAGTGGTCTGGTGATGATAAAGAAAATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCA
ATACTGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis