Browse Element(s) Details


Os.49388.1.S1_at

Description gb:AK120279.1
DB_XREF= gi:37989902
TID=Os.49388.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049G18, full insert sequence.
FL= gb:AK120279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g624309/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62379OsAffx.25795.1.S1_at10/113+35274340..35276037Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g62388OsAffx.3674.1.S1_at11/113+35276862..35279517hypothetical protein
LOC_Os03g62400OsAffx.25796.1.S1_at10/113+35284103..35287960pentatricopeptide, putative
LOC_Os03g62410Os.52881.1.S1_at11/113+35289129..35293830Phospholipase D gamma 3, putative, expressed
LOC_Os03g62420OsAffx.13583.1.S1_at11/113+35295028..35297793expressed protein
LOC_Os03g62430Os.49388.1.S1_at9/113+35299723..35304099Calcium binding EGF domain containing protein, expressed
LOC_Os03g62440NANA3+35304728..35305240hypothetical protein
LOC_Os03g62450Os.10827.1.S1_x_at10/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62450Os.46055.2.S1_x_at6/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.7.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.1.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.2.S1_x_at4/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.5.S1_x_at1/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62470OsAffx.25789.1.S1_at1/113+35316963..35317358No apical meristem protein
LOC_Os03g62480Os.23021.1.S1_at1/113+35319484..35320914UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g62490Os.10849.1.S1_at11/113+35321679..35324125Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os03g62500Os.18526.1.S1_at11/113+35324819..35330993Shaggy-related protein kinase kappa, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49388.1.S1_at--1144--2631Chr03:35300225..35300249 (25 bp)
AAGCCAATTTTTCTCAACTGTCTTG
LOC_Os03g62430
Os.49388.1.S1_at--586--4351Chr03:35300182..35300206 (25 bp)
GCCACTGTTTTCTTCAAAGCCTAAG
LOC_Os03g62430
Os.49388.1.S1_at--380--9771Chr03:35300017..35300041 (25 bp)
TAAGACTGCAACTCCTAAGAGCTGC
LOC_Os03g62430
Os.49388.1.S1_at--957--7031Chr03:35299926..35299950 (25 bp)
GTACAAATGTACTTCCCTGAACAGC
LOC_Os03g62430
Os.49388.1.S1_at--1029--7911Chr03:35299857..35299881 (25 bp)
GGTTGTCTCTAGGTGCTATACCATG
LOC_Os03g62430
Os.49388.1.S1_at--518--711Chr03:35299823..35299847 (25 bp)
ATGATGTACTCTTCACAGTTTCCTC
LOC_Os03g62430
Os.49388.1.S1_at--60--1211Chr03:35299807..35299831 (25 bp)
AGTTTCCTCGCTGATTGTATTTGTT
LOC_Os03g62430
Os.49388.1.S1_at--169--6871Chr03:35299791..35299815 (25 bp)
GTATTTGTTTCGACCCTTGTAATGA
LOC_Os03g62430
Os.49388.1.S1_at--484--5291Chr03:35299726..35299750 (25 bp)
GAATGGCACAGACCAATCGATTTCT
LOC_Os03g62430
Os.49388.1.S1_at--549--3411Chr03:35299694..35299718 (25 bp)
CAGCAGCTCTATCTATTTTTGTGGA
NONE
Os.49388.1.S1_at--261--8031Chr03:35299672..35299696 (25 bp)
GGAGTGGTTAGTTGCAACAGCTCTA
NONE
Target Sequence 
AAGCCAATTTTTCTCAACTGTCTTGGTGAACAGAAAAATTTGTGCCACTGTTTTCTTCAAAGCCTAAGAGATAAAACAAC
AATGGATATACTGGATTCTCAAGTTGTAGAGGAAGCTAGCCANANAGAGATTGATGNAATNGCCTCAGTTGCAGAGATGT
GCTTAAAGACTAAAGGAGCAAAGAGACCTAAAATGAAAGAAGTGGAGNTAAGACTGCAACTCCTAAGAGCTGCAAGATCN
AGGGCATACAAGGAAGACTTACAAAGGAGCAGCGAAATAAAGCCGTTATTAACTCCGAAGTACAAATGTACTTCCCTGAA
CAGCANCAAGAATGTTGAAATGGGCCTTGTTGCTAATCCAGAATNTCAGGTTGTCTCTAGGTGCTATACCATGGAGAGAG
AGATGATGTACTCTTCACAGTTTCCTCGCTGATTGTATTTGTTTCGACCCTTGTAATGATTTATTTATTTTTCGCTTATT
TTTGTAGACTGTACAAAATGAATGGCACAGACCAATCGATTTCTCTGNATGCAGCAGCTCTATCTATTTTTGTGGAGTGG
TTAGTTGCAACAGCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis