Browse Element(s) Details


OsAffx.13586.2.S1_at

Description tigr:9631.m06178
TID=OsAffx.13586.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6253911/11hypothetical protein
LOC_Os03g625221/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62500Os.18526.1.S1_at11/113+35324819..35330993Shaggy-related protein kinase kappa, putative, expressed
LOC_Os03g62510Os.22483.1.A1_s_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62510Os.22483.1.A1_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62516OsAffx.3676.1.S1_at11/113+35340066..35341620hypothetical protein
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13586.2.S1_at--288--7271Chr03:35349744..35349768 (25 bp)
GTGCCATTTCCTCTGGCGAAGACCA
LOC_Os03g62539
OsAffx.13586.2.S1_at--106--5371Chr03:35349761..35349785 (25 bp)
GAAGACCATCCCAGCTTCATCATGA
LOC_Os03g62539
OsAffx.13586.2.S1_at--58--551Chr03:35349768..35349792 (25 bp)
ATCCCAGCTTCATCATGACAGTCAT
LOC_Os03g62539
OsAffx.13586.2.S1_at--173--3531Chr03:35349781..35349805 (25 bp)
CATGACAGTCATCAGCGAGTCTGCT
LOC_Os03g62539
OsAffx.13586.2.S1_at--793--6091Chr03:35349797..35349821 (25 bp)
GAGTCTGCTGAGTTCCAATCTGGCC
LOC_Os03g62539
OsAffx.13586.2.S1_at--662--8451Chr03:35349817..35349839 (23 bp)
TGGCCATCCCAGACGAGAGGTAAAA
LOC_Os03g62539
OsAffx.13586.2.S1_at--877--2452Chr03:35350963..35350987 (25 bp)
AACAAGGAACGCCACAGCTCAAGCT
LOC_Os03g62539
OsAffx.13586.2.S1_at--829--4831Chr03:35350979..35351003 (25 bp)
GCTCAAGCTTGGTTTTAATGATTGT
LOC_Os03g62539
OsAffx.13586.2.S1_at--58--9871Chr03:35351032..35351056 (25 bp)
TACACTTGCTCATGGACAACATCCT
LOC_Os03g62539
OsAffx.13586.2.S1_at--238--1071Chr03:35351058..35351082 (25 bp)
AGGGATGTATTGGAATTCTCCATCA
LOC_Os03g62539
OsAffx.13586.2.S1_at--995--6611Chr03:35351083..35351107 (25 bp)
GTTGGGTCACACTACGACGGTATCA
LOC_Os03g62539
Target Sequence 
GTGCCATTTCCTCTGGCGAAGACCATCCCAGCTTCATCATGACAGTCATCAGCGAGTCTGCTGAGTTCCAATCTGGCCAT
CCCAGACGAGAGGTAAAAGCAAAACAAGGAACGCCACAGCTCAAGCTTGGTTTTAATGATTGTGATGAAAATTTAGCTGC
CCCAAACTTATTACACTTGCTCATGGACAACATCCTAAGGGATGTATTGGAATTCTCCATCAGTTGGGTCACACTACGAC
GGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13586.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis