Browse Element(s) Details


OsAffx.25797.1.S1_at

Description tigr:9631.m06181
TID=OsAffx.25797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6257011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62510Os.22483.1.A1_s_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62510Os.22483.1.A1_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62516OsAffx.3676.1.S1_at11/113+35340066..35341620hypothetical protein
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25797.1.S1_at--1063--2411Chr03:35361066..35361200 (25 bp)
AAAAGTTACTCGTCTGGGTGCGCGA
LOC_Os03g62570
OsAffx.25797.1.S1_at--1077--71Chr03:35361206..35361230 (25 bp)
ATTCCATTTGGAAAGCTCGCGCCGC
LOC_Os03g62570
OsAffx.25797.1.S1_at--199--8851Chr03:35361368..35361392 (25 bp)
TGATCTCGTCAAGCCTTTGATGGCC
LOC_Os03g62570
OsAffx.25797.1.S1_at--396--4531Chr03:35361390..35361414 (25 bp)
GCCGCCTGCGTCATTTTCAGAGGTA
LOC_Os03g62570
OsAffx.25797.1.S1_at--430--2571Chr03:35361415..35361439 (25 bp)
AACTGTGGCATCATGTCAGCTTCTT
LOC_Os03g62570
OsAffx.25797.1.S1_at--662--3391Chr03:35361431..35361455 (25 bp)
CAGCTTCTTGGCTCACAGGAGGGAT
LOC_Os03g62570
OsAffx.25797.1.S1_at--1075--1791Chr03:35361470..35361494 (25 bp)
ACCCGTTGAATACTTCTTCGCAGAG
LOC_Os03g62570
OsAffx.25797.1.S1_at--778--9231Chr03:35361522..35361546 (25 bp)
TCCATCGTCGAAGCTTGCACCATGA
LOC_Os03g62570
OsAffx.25797.1.S1_at--131--5531Chr03:35361702..35361726 (25 bp)
GAAACAAGTGTTCGTTTTGCCCTGA
LOC_Os03g62570
OsAffx.25797.1.S1_at--343--3171Chr03:35361728..35361752 (25 bp)
CAATATCAAATTGCGCACCCGAGCG
LOC_Os03g62570
OsAffx.25797.1.S1_at--772--8851Chr03:35361804..35361828 (25 bp)
TGATGAATATGTCCCCGATGCCCTT
LOC_Os03g62570
Target Sequence 
AAAAGTTACTCGTCTGGGTGCGCGACGGCTATTCCATTTGGAAAGCTCGCGCCGCTCTTCACCATTACAATGCCAATCAT
CCGGGAGCGGAGTATGATCTCGTCAAGCCTTTGATGGCCGCCTGCGTCATTTTCAGAGGTAAACTGTGGCATCATGTCAG
CTTCTTGGCTCACAGGAGGGATCAGCTGGTTGCACCACCCGTTGAATACTTCTTCGCAGAGCTACGCGATGGCTGCTCCG
ACGACGACTCCATCGTCGAAGCTTGCACCATGATCGAAAATCCACAGAGCTGCTCCGGAAACAAGTGTTCGTTTTGCCCT
GAACAATATCAAATTGCGCACCCGAGCGAGCAGGAGCTTTTATGTGGAAAAGAAGAACATGCCAAGGACTTTATCAGACT
GATGAATATGTCCCCGATGCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis