Browse Element(s) Details


Os.26040.1.S1_at

Description gb:AK061198.1
DB_XREF= gi:32971216
TID=Os.26040.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-H08, full insert sequence.
FL= gb:AK061198.1 gb:AK099076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6263011/11ribosomal protein S6 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660Os.10899.1.S1_at11/113+35401110..35405320transposon protein, putative, unclassified, expressed
LOC_Os03g62670Os.27628.2.S1_a_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670Os.27628.1.S1_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26040.1.S1_at--37--7531Chr03:35384732..35384756 (25 bp)
GTGGAAGTCTTCAACCGAGGAGTCA
LOC_Os03g62630
Os.26040.1.S1_at--714--6171Chr03:35384748..35384772 (25 bp)
GAGGAGTCATCCCACTGGCATACAG
LOC_Os03g62630
Os.26040.1.S1_at--140--2491Chr03:35384786..35384810 (25 bp)
AACAGCAGGACTGGTTTGCCATCCA
LOC_Os03g62630
Os.26040.1.S1_at--475--5251Chr03:35384823..35384847 (25 bp)
GAATCTACCTCCTTGTGACATACTT
LOC_Os03g62630
Os.26040.1.S1_at--986--5251Chr03:35384858..35384882 (25 bp)
GAATCCCTGGATGCTCTGCAAATGA
LOC_Os03g62630
Os.26040.1.S1_at--824--2991Chr03:35384878..35384902 (25 bp)
AATGAGGCTCAATGCTGACGACGAT
LOC_Os03g62630
Os.26040.1.S1_at--1056--9771Chr03:35384948..35384972 (25 bp)
TAAGATCAGTTTCACCACCTGGACT
LOC_Os03g62630
Os.26040.1.S1_at--582--2411Chr03:35385063..35385087 (25 bp)
AAAAATGTCGCCCTTTCTGTTGATA
LOC_Os03g62630
Os.26040.1.S1_at--196--10191Chr03:35385121..35385145 (25 bp)
TATAGCACTGCTCTGATCTTACCTG
LOC_Os03g62630
Os.26040.1.S1_at--687--10411Chr03:35385139..35385163 (25 bp)
TTACCTGGTACTCCTACACGTTAAG
LOC_Os03g62630
Os.26040.1.S1_at--660--2471Chr03:35385176..35385200 (25 bp)
AACACTTTTGTGGAGCATGGCCTGC
LOC_Os03g62630
Target Sequence 
GTGGAAGTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCAC
CTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCTCAATG
CTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGAC
TCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGATTGGTTTTTCGCTGC
AATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGAAATTTGTCTTCCTTTTTTTTNCGTTATAGCACTG
CTCTGATCTTACCTGGTACTCCTACACGTTAAGGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis