Browse Element(s) Details


Os.25061.1.S1_at

Description gb:AK068216.1
DB_XREF= gi:32978234
TID=Os.25061.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149P17, full insert sequence.
FL= gb:AK101493.1 gb:AK068216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6265011/11Ion channel DMI1-like, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660Os.10899.1.S1_at11/113+35401110..35405320transposon protein, putative, unclassified, expressed
LOC_Os03g62670Os.27628.2.S1_a_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670Os.27628.1.S1_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed
LOC_Os03g62690Os.50857.1.S2_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62690Os.50857.1.S1_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25061.1.S1_at--128--8311Chr03:35398740..35398764 (25 bp)
GGCTACCGTCTTGTGGATGCTGAAC
LOC_Os03g62650
Os.25061.1.S1_at--1039--9111Chr03:35398757..35398781 (25 bp)
TGCTGAACGCGCCATAATCAATCCA
LOC_Os03g62650
Os.25061.1.S1_at--101--1871Chr03:35398927..35398951 (25 bp)
ACGAGCAGACGACTGTTGCATTGCA
LOC_Os03g62650
Os.25061.1.S1_at--432--9071Chr03:35398943..35398967 (25 bp)
TGCATTGCAGAATTGACATCCGGAA
LOC_Os03g62650
Os.25061.1.S1_at--83--5291Chr03:35398968..35398992 (25 bp)
GAAGGCCAAGCACTAACTGCGTCAG
LOC_Os03g62650
Os.25061.1.S1_at--242--4651Chr03:35398986..35399010 (25 bp)
GCGTCAGCGCGAGAGAGCAATGCAT
LOC_Os03g62650
Os.25061.1.S1_at--878--10811Chr03:35399020..35399044 (25 bp)
TTGGGATCAATCTCGGGCTATGACT
LOC_Os03g62650
Os.25061.1.S1_at--936--2851Chr03:35399064..35399088 (25 bp)
AAGTGCGGAATGATCCATGCCATTG
LOC_Os03g62650
Os.25061.1.S1_at--205--7591Chr03:35399156..35399180 (25 bp)
GGGCTTCGATCCTGTTTATTGTATA
LOC_Os03g62650
Os.25061.1.S1_at--426--5171Chr03:35399210..35399234 (25 bp)
GAAACTTCCAAATACTCCGTTGGCT
LOC_Os03g62650
Os.25061.1.S1_at--278--8491Chr03:35399230..35399254 (25 bp)
TGGCTCCGATTGCTGTACACGCGAA
LOC_Os03g62650
Target Sequence 
GGCTACCGTCTTGTGGATGCTGAACGCGCCATAATCAATCCACCAGACANAGTTTCAAGGCGGAGATGGTCGGCCAAAGA
TGTTTTTGTTGTAATTACCGAGAAAGAATGAGTTACATCATTTAGCAAACCATGAGAAATCACCACTAGTAAGGCAAAAT
TGACAGCAGTGCACGTAAGAGATCAACACGAGCAGACGACTGTTGCATTGCAGAATTGACATCCGGAAGAAGGCCAAGCA
CTAACTGCGTCAGCGCGAGAGAGCAATGCATAACCAGATTTTGGGATCAATCTCGGGCTATGACTTGCCAATTGCAATGT
ACATAAGTGCGGAATGATCCATGCCATTGCGCAGAAAGGATGAGAAGAGAAACACCAAGCACGATTTGCTTAGATCAGTT
TTGTTTTTTTAGAGAGGGGCTTCGATCCTGTTTATTGTATAGTATTACATCTTTTTTGTGTACTCTGTTAGAAACTTCCA
AATACTCCGTTGGCTCCGATTGCTGTACACGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis