Browse Element(s) Details


Os.10611.1.S1_at

Description gb:AK101917.1
DB_XREF= gi:32987126
TID=Os.10611.1
CNT=55
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071I21, full insert sequence.
FL= gb:AK104650.1 gb:AK099274.1 gb:AK101917.1 gb:AK060923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6262011/11salt tolerance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660Os.10899.1.S1_at11/113+35401110..35405320transposon protein, putative, unclassified, expressed
LOC_Os03g62670Os.27628.2.S1_a_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670Os.27628.1.S1_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009611biological_processresponse to wounding
GO:0009644biological_processresponse to high light intensity
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10611.1.S1_at--893--3571Chr03:35380469..35380493 (25 bp)
CATATGGTGCTATTGTTGGCTGCCT
LOC_Os03g62620
Os.10611.1.S1_at--959--10831Chr03:35380423..35380447 (25 bp)
TTGTGTTGTTACTCATCTAGCTGCC
LOC_Os03g62620
Os.10611.1.S1_at--908--1592Chr01:5433222..5433656 (25 bp)
AGCTGCCTCCCGTTATTTTGTTCAT
NONE
Os.10611.1.S1_at--627--3071Chr03:35380330..35380354 (25 bp)
AATCAACAGGCCCTTGTTCTTTGTG
LOC_Os03g62620
Os.10611.1.S1_at--1154--9211Chr03:35380288..35380312 (25 bp)
TCGTTATGTTTTCCCCAAATACTGG
LOC_Os03g62620
Os.10611.1.S1_at--132--8551Chr03:35380179..35380203 (25 bp)
TGGAGGTAGCCACCTTGCATTCATC
LOC_Os03g62620
Os.10611.1.S1_at--839--8671Chr03:35380122..35380146 (25 bp)
TGTGTTTAGCTACTCCATTACGGAT
LOC_Os03g62620
Os.10611.1.S1_at--215--8151Chr03:35380068..35380092 (25 bp)
GGACAAGCCAGTGCTCTGTCTGCAA
LOC_Os03g62620
Os.10611.1.S1_at--703--8491Chr03:35380032..35380056 (25 bp)
TGGCTACCGTCTTCGCTATGTATAA
LOC_Os03g62620
Os.10611.1.S1_at--462--4131Chr03:35379953..35379977 (25 bp)
CGCATACATGTATTCTTCCTTTCTT
LOC_Os03g62620
Os.10611.1.S1_at--685--10671Chr03:35379938..35379962 (25 bp)
TTCCTTTCTTGCATCCTTCGAAGAA
LOC_Os03g62620
Target Sequence 
CATATGGTGCTATTGTTGGCTGCCTTATCTGAGCTGAGCCGCTGTGTTGTGTTGTTACTCATCTAGCTGCCTCCCGTTAT
TTTGTTCATGTTTATTAGACTCGGGACAACTTAATTTGTGGTGGAAACCTTGATAATAAAATCAACAGGCCCTTGTTCTT
TGTGGGGTCAGTTGATATTTTTCGTTATGTTTTCCCCAAATACTGGTTGTGAGGGCGAATGCTGTTCAGGAACCTGTTCC
AATGGTAAACTGAAGAATGGTTGTCAATTTNGCTGATTAAATGATGGTTCTGGAGGTAGCCACCTTGCATTCATCCATCG
ATATCAGTGTGAATGTGATGAATGGTTTGTGTTTAGCTACTCCATTACGGATGATTTGGATAGATTTTGACTAATTGGAC
AGGACAAGCCAGTGCTCTGTCTGCAACTCTGCATTGCTGGCTACCGTCTTCGCTATGTATAATCGTAGAGAGTTTCATGA
CAGACAGTAGCATTCCTGGAAAACCAGAATCATATACGCATACATGTATTCTTCCTTTCTTGCATCCTTCGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis