Browse Element(s) Details

Os.11748.2.S2_a_at

Description

gb:CB678263
DB_XREF= gi:29681988
DB_XREF=OSJNEe15P12.r
CLONE=OSJNEe15P12
TID=Os.11748.2
CNT=61
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.11748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23401 sarcoplasmic reticulum protein-like protein mRNA, complete cds
FL= gb:AK101661.1 gb:AK067985.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g62640	11/11	RNA-binding protein Luc7-like 2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g62570	OsAffx.25797.1.S1_at	11/11	3	+	35361002..35361877	hypothetical protein
LOC_Os03g62580	Os.27446.2.S1_at	11/11	3	+	35363412..35367021	Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580	Os.27446.1.S1_a_at	11/11	3	+	35363412..35367021	Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580	Os.27446.3.S1_x_at	10/11	3	+	35363412..35367021	Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590	Os.16157.1.S1_at	11/11	3	+	35367580..35369420	steroleosin-B, putative, expressed
LOC_Os03g62600	Os.49779.1.S1_at	11/11	3	+	35371671..35373522	Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610	Os.49304.1.A1_at	10/11	3	+	35375742..35379887	expressed protein
LOC_Os03g62620	Os.10611.1.S1_at	11/11	3	+	35379908..35382548	salt tolerance protein, putative, expressed
LOC_Os03g62630	Os.26040.1.S1_at	11/11	3	+	35383358..35385296	ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640	Os.11748.2.S2_a_at	11/11	3	+	35385374..35391403	RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640	Os.11748.2.S2_at	11/11	3	+	35385374..35391403	RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640	Os.11748.2.S1_a_at	10/11	3	+	35385374..35391403	RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650	Os.25061.1.S1_at	11/11	3	+	35392356..35399319	Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660	Os.10899.1.S1_at	11/11	3	+	35401110..35405320	transposon protein, putative, unclassified, expressed
LOC_Os03g62670	Os.27628.2.S1_a_at	11/11	3	+	35406586..35408745	Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670	Os.27628.1.S1_at	11/11	3	+	35406586..35408745	Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62680	Os.49395.1.S1_at	7/11	3	+	35409217..35412888	glycohydrolase family protein, expressed
LOC_Os03g62690	Os.50857.1.S2_at	11/11	3	+	35413245..35418862	pentatricopeptide, putative, expressed
LOC_Os03g62690	Os.50857.1.S1_at	11/11	3	+	35413245..35418862	pentatricopeptide, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006396	biological_process	RNA processing
GO:0003723	molecular_function	RNA binding
GO:0005488	molecular_function	binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11748.2.S2_a_at--1160--143	1	Chr03:35386118..35386142 (25 bp)	AGAAGGAAGGCACCTGAAGATGACA	LOC_Os03g62640
Os.11748.2.S2_a_at--778--825	1	Chr03:35386114..35386134 (21 bp)	GGCACCTGAAGATGACAGGCGATCA	LOC_Os03g62640
Os.11748.2.S2_a_at--785--631	1	Chr03:35386025..35386124 (25 bp)	GATGACAGGCGATCAAGAGAATACA	LOC_Os03g62640
Os.11748.2.S2_a_at--554--211	1	Chr03:35386021..35386120 (25 bp)	ACAGGCGATCAAGAGAATACAGCAA	LOC_Os03g62640
Os.11748.2.S2_a_at--775--275	1	Chr03:35386011..35386035 (25 bp)	AAGAGAATACAGCAAGGACCGCAAT	LOC_Os03g62640
Os.11748.2.S2_a_at--818--147	1	Chr03:35386008..35386032 (25 bp)	AGAATACAGCAAGGACCGCAATGGT	LOC_Os03g62640
Os.11748.2.S2_a_at--646--179	1	Chr03:35385994..35386018 (25 bp)	ACCGCAATGGTCAGGCATCCAGGGA	LOC_Os03g62640
Os.11748.2.S2_a_at--163--321	1	Chr03:35385990..35386014 (25 bp)	CAATGGTCAGGCATCCAGGGATAGA	LOC_Os03g62640
Os.11748.2.S2_a_at--976--781	1	Chr03:35385986..35386010 (25 bp)	GGTCAGGCATCCAGGGATAGAGATT	LOC_Os03g62640
Os.11748.2.S2_a_at--289--827	1	Chr03:35385981..35386005 (25 bp)	GGCATCCAGGGATAGAGATTCAGAA	LOC_Os03g62640
Os.11748.2.S2_a_at--478--923	1	Chr03:35385977..35386001 (25 bp)	TCCAGGGATAGAGATTCAGAAAGAA	LOC_Os03g62640

Target Sequence

AGAAGGAAGGCACCTGAAGATGACAGGCGATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
TTCAGAAAGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis