Browse Element(s) Details


Os.27628.2.S1_a_at

Description gb:CB685284
DB_XREF= gi:29689009
DB_XREF=OSJNEf15J02.r
CLONE=OSJNEf15J02
TID=Os.27628.2
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27628 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181919.1 (A.thaliana) putative methyl chloride transferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6267011/11Thiopurine S-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660Os.10899.1.S1_at11/113+35401110..35405320transposon protein, putative, unclassified, expressed
LOC_Os03g62670Os.27628.2.S1_a_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670Os.27628.1.S1_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed
LOC_Os03g62690Os.50857.1.S2_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62690Os.50857.1.S1_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27628.2.S1_a_at--875--4511Chr03:35407286..35407310 (25 bp)
GCCGACGATTTCTTCACGTGGGAGC
LOC_Os03g62670
Os.27628.2.S1_a_at--702--191Chr03:35407293..35407317 (25 bp)
ATTTCTTCACGTGGGAGCCGCCGGA
LOC_Os03g62670
Os.27628.2.S1_a_at--963--3951Chr03:35407314..35407338 (25 bp)
CGGAGCCGTTCCATCTCATCTTCGA
LOC_Os03g62670
Os.27628.2.S1_a_at--435--9611Chr03:35407329..35407487 (25 bp)
TCATCTTCGACTACACATTCTTCTG
LOC_Os03g62670
Os.27628.2.S1_a_at--1109--9851Chr03:35407479..35407498 (20 bp)
TACACATTCTTCTGTGCTCTGCATC
LOC_Os03g62670
Os.27628.2.S1_a_at--308--10611Chr03:35407483..35407507 (25 bp)
TTCTGTGCTCTGCATCCGTCGATGA
LOC_Os03g62670
Os.27628.2.S1_a_at--36--9071Chr03:35407493..35407517 (25 bp)
TGCATCCGTCGATGAGGCCAGCATG
LOC_Os03g62670
Os.27628.2.S1_a_at--475--2771Chr03:35407522..35407546 (25 bp)
AAGAGAATGGCCGACCTGCTACGAC
LOC_Os03g62670
Os.27628.2.S1_a_at--994--3831Chr03:35407537..35407561 (25 bp)
CTGCTACGACCGGACGGAGAGCTCA
LOC_Os03g62670
Os.27628.2.S1_a_at--382--891Chr03:35407716..35407740 (25 bp)
AGGCCGGGCCACCATTCAATACAAC
LOC_Os03g62670
Os.27628.2.S1_a_at--394--8451Chr03:35407722..35407746 (25 bp)
GGCCACCATTCAATACAACAGTGCT
LOC_Os03g62670
Target Sequence 
GCCGACGATTTCTTCACGTGGGAGCCGCCGGAGCCGTTCCATCTCATCTTCGACTACACATTCTTCTGTGCTCTGCATCC
GTCGATGAGGCCAGCATGGGCGAAGAGAATGGCCGACCTGCTACGACCGGACGGAGAGCTCATCACCCTCATGTATTTGG
CTGAAGGACAAGAGGCCGGGCCACCATTCAATACAACAGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27628.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis