Browse Element(s) Details


Os.10899.1.S1_at

Description gb:AK070364.1
DB_XREF= gi:32980388
TID=Os.10899.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050I08, full insert sequence.
FL= gb:AK070364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6266011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660Os.10899.1.S1_at11/113+35401110..35405320transposon protein, putative, unclassified, expressed
LOC_Os03g62670Os.27628.2.S1_a_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670Os.27628.1.S1_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed
LOC_Os03g62690Os.50857.1.S2_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62690Os.50857.1.S1_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10899.1.S1_at--494--851Chr03:35403685..35403709 (25 bp)
ATGGCAATCAGCTGCATCCAAGCAA
LOC_Os03g62660
Os.10899.1.S1_at--330--1491Chr03:35403705..35403833 (25 bp)
AGCAACACTATGCAGTTTGGCCAAA
LOC_Os03g62660
Os.10899.1.S1_at--189--2151Chr03:35403842..35403866 (25 bp)
ACAGCAGAGCACTCTAGAGTCCAGT
LOC_Os03g62660
Os.10899.1.S1_at--945--951Chr03:35403996..35404020 (25 bp)
AGGACGATCAAGTGCCTTATGGCAG
LOC_Os03g62660
Os.10899.1.S1_at--73--10111Chr03:35404013..35404037 (25 bp)
TATGGCAGACGGACATGACAGCAAT
LOC_Os03g62660
Os.10899.1.S1_at--376--6211Chr03:35405019..35405043 (25 bp)
GAGGCATTCCCCTCTGGATGTAGAG
LOC_Os03g62660
Os.10899.1.S1_at--428--2571Chr03:35405087..35405111 (25 bp)
AACTGGTCATTTTGTCTCGTCTATA
LOC_Os03g62660
Os.10899.1.S1_at--684--4991Chr03:35405153..35405177 (25 bp)
GCAGCTAAAATTCGGTCGCTTTCTC
LOC_Os03g62660
Os.10899.1.S1_at--195--7231Chr03:35405167..35405191 (25 bp)
GTCGCTTTCTCGTAAGCAGTGACCT
LOC_Os03g62660
Os.10899.1.S1_at--45--1351Chr03:35405214..35405238 (25 bp)
AGAGTACTCCTCCATTGACATGTGA
LOC_Os03g62660
Os.10899.1.S1_at--313--6731Chr03:35405251..35405275 (25 bp)
GTTCTTGTGTAAATACCCGAGCGGT
LOC_Os03g62660
Target Sequence 
ATGGCAATCAGCTGCATCCAAGCAACACTATGCAGTTTGGCCAAACTACATCAACAGCAGAGCACTCTAGAGTCCAGTGG
ATGTACCAGAATATATTTCAGGACGATCAAGTGCCTTATGGCAGACGGACATGACAGCAATCAAATACTGGGTTCAGATG
GTGCCATTTCAGGTTTTCATCAGACATACAGAAGGAAAGAACTCTTTCTCAAGAAAACAAACTCAAGGGAGGCATTCCCC
TCTGGATGTAGAGCAGATCTAACATCAGAATAATCGGAACACAGTAATGTGGCACAAACTGGTCATTTTGTCTCGTCTAT
AGAAAACTAGGAATGTAGTCATGTTACATCTCAGATCTTGAAGCAGCTAAAATTCGGTCGCTTTCTCGTAAGCAGTGACC
TAGCTTGAAATTTAGTCTAATCAAGAGTACTCCTCCATTGACATGTGAATTCTTTCGTTTGTTCTTGTGTAAATACCCGA
GCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis