Browse Element(s) Details


Os.49304.1.A1_at

Description gb:AK063613.1
DB_XREF= gi:32973631
TID=Os.49304.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D06, full insert sequence.
FL= gb:AK063613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6261010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660Os.10899.1.S1_at11/113+35401110..35405320transposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49304.1.A1_at--1038--7171Chr03:35378194..35378218 (25 bp)
GTCTGGGTTGTAACATCTGATGCAT
LOC_Os03g62610
Os.49304.1.A1_at--939--5311Chr03:35378708..35378729 (22 bp)
GAAGGTGCTCTTATTTGGAGCTCTA
LOC_Os03g62610
Os.49304.1.A1_at--109--2091Chr03:35379475..35379499 (25 bp)
ACATCGTTGCAAGGGAAGCTTTTTC
LOC_Os03g62610
Os.49304.1.A1_at--718--4971Chr03:35379525..35379549 (25 bp)
GCATGCATTGAAAGATCTCCGGAAT
LOC_Os03g62610
Os.49304.1.A1_at--679--1091Chr03:35379587..35379611 (25 bp)
AGTGTGACTGTATGACCTAGAGGCA
LOC_Os03g62610
Os.49304.1.A1_at--985--2951Chr03:35379618..35379642 (25 bp)
AATGGCTAACAACCGCACCTGGGCA
LOC_Os03g62610
Os.49304.1.A1_at--1092--5071Chr03:35379632..35379656 (25 bp)
GCACCTGGGCATGAACAAGTTTGTA
LOC_Os03g62610
Os.49304.1.A1_at--954--4431Chr03:35379681..35379705 (25 bp)
GCCTTGCATTGGATCCGTAGGGCAT
LOC_Os03g62610
Os.49304.1.A1_at--75--5811Chr03:35379742..35379766 (25 bp)
GACCCCGTTTGGACTTCGTAGAGAG
LOC_Os03g62610
Os.49304.1.A1_at--585--2791Chr03:35379774..35379798 (25 bp)
AAGAGGTTAGGCATGCTTTTGCATC
LOC_Os03g62610
Os.49304.1.A1_at--796--1571Chr03:35379877..35379901 (25 bp)
AGCTCAACTAACGAGATCTTGGCAG
NONE
Target Sequence 
GTCTGGGTTGTAACATCTGATGCATTGGAGCAACAATTGGCACATGGAGAAGGTGCTCTTATTTGGAGCTCTAAAAGATT
GGTCAAAGAGATAAAAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAGGAAACCAGATCAACATCGTTGCAAGGGAAGC
TTTTTCAGCNCAAGCTGAAACCTAAAGTAGTGCATGCATTGAAAGATCTCCGGAATAAGCTTGAAGAAGAAGAGCGGAGA
AAGAGGTGACTACAGTGTGACTGTATGACCTAGAGGCATGAACAAATGGCTAACAACCGCACCTGGGCATGAACAAGTTT
GTAAAATGGCTGACAACCTCACTTGCTGCCTTGCATTGGATCCGTAGGGCATTGACATGATGTAAGATAGGATCTGGTTT
TTTGTAAAGACCCCGTTTGGACTTCGTAGAGAGAGGCTTCAAGAGGTTAGGCATGCTTTTGCATCAGAACAATTTTGCAA
GCTGCAGAGAAGAAAGGCATGAACTGTACAACAATGTAAATATCAGCAGATTCCTNTAAATCAAGCTCAACTAACGAGAT
CTTGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49304.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis