Browse Element(s) Details


Os.27446.1.S1_a_at

Description gb:AK070821.1
DB_XREF= gi:32980844
TID=Os.27446.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063L20, full insert sequence.
FL= gb:AK062057.1 gb:AK070821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6258011/11Vacuolar sorting protein 9 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62516OsAffx.3676.1.S1_at11/113+35340066..35341620hypothetical protein
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27446.1.S1_a_at--369--7111Chr03:35366414..35366438 (25 bp)
GTCACCAGATATACGCTGCTGTCTA
LOC_Os03g62580
Os.27446.1.S1_a_at--1039--7951Chr03:35366467..35366491 (25 bp)
GGATCAGCTCCTTAATTCAGTAGAT
LOC_Os03g62580
Os.27446.1.S1_a_at--721--6391Chr03:35366553..35366577 (25 bp)
GATCGAGATTGTACACGCACGCAAA
LOC_Os03g62580
Os.27446.1.S1_a_at--988--2351Chr03:35366602..35366626 (25 bp)
AAACGAGTTCCAGGCATCTGCAACA
LOC_Os03g62580
Os.27446.1.S1_a_at--996--7651Chr03:35366635..35366659 (25 bp)
GGGATTCCAGGATACACTACAGGTA
LOC_Os03g62580
Os.27446.1.S1_a_at--532--5291Chr03:35366684..35366708 (25 bp)
GAATGGATTCTTGTGCCTTTGCATT
LOC_Os03g62580
Os.27446.1.S1_a_at--546--2031Chr03:35366712..35366736 (25 bp)
ACTTGCAAGCCCTCTGTAATAGCGT
LOC_Os03g62580
Os.27446.1.S1_a_at--1145--7051Chr03:35366727..35366751 (25 bp)
GTAATAGCGTCCACTTCTGTAATTT
LOC_Os03g62580
Os.27446.1.S1_a_at--373--9751Chr03:35366746..35366770 (25 bp)
TAATTTTTAGTTCCTGTCTGCCCCA
LOC_Os03g62580
Os.27446.1.S1_a_at--850--9991Chr03:35366782..35366806 (25 bp)
TAGCGTAGTCTCTAGGTGTGCGTGA
LOC_Os03g62580
Os.27446.1.S1_a_at--306--2911Chr03:35366899..35366923 (25 bp)
AAGGTATCTGTTTGCCTTGGTGCAA
LOC_Os03g62580
Target Sequence 
GTCACCAGATATACGCTGCTGTCTAAAGCTTTAAGAAAGTTATCGGTAGATGAGGATCAGCTCCTTAATTCAGTAGATGA
TTGATGAAGCCATGTAAAAATGCTGACCAGAGATGACATGTCCTATTAACCACATAATTGATCGAGATTGTACACGCACG
CAAAGTTTTCCATTGACTGTAGGAAAGCAAACGAGTTCCAGGCATCTGCAACATGGTTCCAGGGATTCCAGGATACACTA
CAGGTATGGCCAAATGATCATCAGAGTTGAGAATGGATTCTTGTGCCTTTGCATTGCAACTTGCAAGCCCTCTGTAATAG
CGTCCACTTCTGTAATTTTTAGTTCCTGTCTGCCCCACTCCTTGGAGCTAGCGTAGTCTCTAGGTGTGCGTGAGGAACTG
CATATGGCACATGTTGCTGTTGCTGATCATGTTCAACCGTTCTACCTCGTACTTNGTATGTTATACAGCAAATCTTCTGT
GCTGAAAGGTATCTGTTTGCCTTGGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27446.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis