Browse Element(s) Details


Os.55270.1.S1_s_at

Description gb:AK107772.1
DB_XREF= gi:32992981
TID=Os.55270.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-B08, full insert sequence.
FL= gb:AK107772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5421011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54170NANA4+32052191..32052791hypothetical protein
LOC_Os04g54180OsAffx.14409.1.S1_at11/114+32054294..32057778D-mannose binding lectin family protein, expressed
LOC_Os04g54190Os.17555.1.S1_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54190OsAffx.26598.1.S1_x_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54200Os.4807.1.S1_at11/114+32067611..32072391diacylglycerol kinase, putative, expressed
LOC_Os04g54210Os.55270.1.S1_s_at11/114+32075929..32076594expressed protein
LOC_Os04g54220OsAffx.4174.1.S1_at10/114+32076784..32077471hypothetical protein
LOC_Os04g54230OsAffx.14410.1.S1_s_at11/114+32078507..32079062expressed protein
LOC_Os04g54230Os.9913.1.S1_at8/114+32078507..32079062expressed protein
LOC_Os04g54240OsAffx.14412.2.S1_s_at11/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54240Os.9445.1.S1_at8/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54250OsAffx.8980.1.S1_at5/114+32085753..32087552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54260NANA4+32088752..32094910transposon protein, putative, unclassified
LOC_Os04g54270NANA4+32095550..32098786transposon protein, putative, unclassified
LOC_Os04g54280Os.27639.1.S1_x_at8/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.53731.1.S1_at3/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.9913.1.S1_at2/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55270.1.S1_s_at--480--6371Chr04:32075968..32075992 (25 bp)
GATCCCGGAGAAGAAGTTTGCGTGC
LOC_Os04g54210
Os.55270.1.S1_s_at--635--6851Chr04:32075983..32076007 (25 bp)
GTTTGCGTGCAAGGCGATCGATCCA
LOC_Os04g54210
Os.55270.1.S1_s_at--664--6391Chr04:32075998..32076022 (25 bp)
GATCGATCCATGAGCCTGAGGCACA
LOC_Os04g54210
Os.55270.1.S1_s_at--647--8911Chr04:32076008..32076032 (25 bp)
TGAGCCTGAGGCACATGAGCCGAGT
LOC_Os04g54210
Os.55270.1.S1_s_at--550--10131Chr04:32076332..32076356 (25 bp)
TATCTGCATACGGTGGTGTGAAGGT
LOC_Os04g54210
Os.55270.1.S1_s_at--119--7731Chr04:32076346..32076370 (25 bp)
GGTGTGAAGGTTTTGTTCTGCGTCT
LOC_Os04g54210
Os.55270.1.S1_s_at--639--2891Chr04:32076352..32076376 (25 bp)
AAGGTTTTGTTCTGCGTCTGTGAAA
LOC_Os04g54210
Os.55270.1.S1_s_at--580--8791Chr04:32076359..32076383 (25 bp)
TGTTCTGCGTCTGTGAAAATCTCAG
LOC_Os04g54210
Os.55270.1.S1_s_at--1014--2811Chr04:32076404..32076428 (25 bp)
AAGTATGTGAATCATCGTCTATGGA
LOC_Os04g54210
Os.55270.1.S1_s_at--155--51Chr04:32076417..32076441 (25 bp)
ATCGTCTATGGATGCCGAAAATACT
LOC_Os04g54210
Os.55270.1.S1_s_at--273--8571Chr04:32076425..32076449 (25 bp)
TGGATGCCGAAAATACTGTTTATTC
LOC_Os04g54210
Target Sequence 
GATCCCGGAGAAGAAGTTTGCGTGCAAGGCGATCGATCCATGAGCCTGAGGCACATGAGCCGAGTGGGCGCGCGCGCGGC
GCAGGCCGTGCGGGAGGGCGCGGGGAGGTCGGTGAAGGACAAGGCGCAGTCGGCGACGACGTCGACGTCGTCGGCGGCGG
CGAGGAGCAGCGGCGGCGGCAGCAGGGCACCCGCCGCGGGGTCGGTGGAGAAGGGCAGGGTGAGCGCGGCGGCGGCGGCG
AGGGCGGCGGAGGAGAAGCGGAGGCGGGCGGAGCAGTCGCTGCGCACCGTCATGTTCCTCTCCGTCTGGGGTCCCAACAC
CTGATGAAGGCTAGTACTAGTAGATGTGTAGGCTAGCGATAGCTTATCTGCATACGGTGGTGTGAAGGTTTTGTTCTGCG
TCTGTGAAAATCTCAGATGTGAATGAAGATGTAATTAAGTATGTGAATCATCGTCTATGGATGCCGAAAATACTGTTTAT
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55270.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis