Browse Element(s) Details


Os.48111.1.S1_at

Description gb:AK066308.1
DB_XREF= gi:32976326
TID=Os.48111.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061I19, full insert sequence.
FL= gb:AK066308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3363011/11Uncharacterized protein family UPF0016 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33590Os.56209.1.S1_at11/118+20841435..20844412Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g33600NANA8+20849854..20851458retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g33610OsAffx.8551.1.S1_at1/118+20851733..20852789retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g33620OsAffx.17315.1.S1_at11/118+20864435..20864954Arginine decarboxylase, putative
LOC_Os08g33630Os.48111.1.S1_at11/118+20867234..20871104Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g33640Os.24556.1.S1_at11/118+20877894..20880759expressed protein
LOC_Os08g33650OsAffx.29493.1.S1_at11/118+20881616..20882761expressed protein
LOC_Os08g33660Os.22375.1.S1_x_at11/118+20886707..20888621MYB1, putative, expressed
LOC_Os08g33670OsAffx.29494.1.S1_at10/118+20893100..20895074No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48111.1.S1_at--1066--7351Chr08:20867875..20867899 (25 bp)
GTGGTCCTGACTAAACCTACTACTG
LOC_Os08g33630
Os.48111.1.S1_at--551--3711Chr08:20867859..20867883 (25 bp)
CTACTACTGTGCATAGGGCCCAAGC
LOC_Os08g33630
Os.48111.1.S1_at--29--2031Chr08:20867827..20867851 (25 bp)
ACTACCGCTGCTGTTATGGGTGGGA
LOC_Os08g33630
Os.48111.1.S1_at--376--7491Chr08:20867808..20867832 (25 bp)
GTGGGAAAAGCTTGGCCTCTCAAAT
LOC_Os08g33630
Os.48111.1.S1_at--904--9371Chr08:20867673..20867697 (25 bp)
TCGAGTGGAGTGCTATTCCTGCTGT
LOC_Os08g33630
Os.48111.1.S1_at--757--91Chr08:20867659..20867683 (25 bp)
ATTCCTGCTGTTTGGTATCATGTCA
LOC_Os08g33630
Os.48111.1.S1_at--357--9631Chr08:20867563..20867587 (25 bp)
TCATGGCCGGTTAACAAGCTTGTTT
LOC_Os08g33630
Os.48111.1.S1_at--1095--2691Chr08:20867548..20867572 (25 bp)
AAGCTTGTTTTCACTACGACTTGAT
LOC_Os08g33630
Os.48111.1.S1_at--996--1831Chr08:20867533..20867557 (25 bp)
ACGACTTGATCTCATCTTAGTAGGT
LOC_Os08g33630
Os.48111.1.S1_at--566--1851Chr08:20867497..20867521 (25 bp)
ACGAAAGCGCTGATCCTTTGCAAGG
LOC_Os08g33630
Os.48111.1.S1_at--464--10711Chr08:20867328..20867352 (25 bp)
TTGCTGCATACTACCATACTATTTT
LOC_Os08g33630
Target Sequence 
GTGGTCCTGACTAAACCTACTACTGTGCATAGGGCCCAAGCACTCTGCACTACCGCTGCTGTTATGGGTGGGAAAAGCTT
GGCCTCTCAAATATCTGAGAAAATGGTCGGATTGTCGAGTGGAGTGCTATTCCTGCTGTTTGGTATCATGTCATACTTGT
CAGGACCAGAAGGAGAATTATAATGCCCCCAGAAAGTCATGCATAAGGAGAATTATCATGTTCATCATGGCCGGTTAACA
AGCTTGTTTTCACTACGACTTGATCTCATCTTAGTAGGTGGACGATGGCGACGAAAGCGCTGATCCTTTGCAAGGAGGAT
NGCGATTACTTAGCTTAGTCAACACATTGTAAACATTTCACTCATCATTCATAAATAACAAGATGNGTACCAAAGACTCT
ACTGNTTGCTTCGTGTTAGTCCCAGNANCAGANAACATTCNGCCAAAACTGTCGGAGTNNTTGCTGCATACTACCATACT
ATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis