Browse Element(s) Details


Os.48131.1.S1_s_at

Description gb:AB117879
DB_XREF= gi:42793980
DB_XREF=AB117879
CLONE=1B02-4C03
TID=Os.48131.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48131 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5889011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58860Os.17892.1.S1_at9/114+34791894..34793355Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58870Os.18157.1.S1_at11/114+34797521..34801722Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g58880Os.6072.1.S1_at11/114+34802943..34809060exocyst subunit EXO70 family protein, putative, expressed
LOC_Os04g58890Os.48131.1.S1_s_at11/114+34812136..34813565expressed protein
LOC_Os04g58890OsAffx.14474.1.S1_at11/114+34812136..34813565expressed protein
LOC_Os04g58900Os.7083.1.S1_at11/114+34815800..34819282hydrolase, NUDIX family protein, expressed
LOC_Os04g58910Os.15783.1.S2_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58910Os.15783.1.S1_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58920Os.55614.1.S1_at11/114+34835503..34837093U-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48131.1.S1_s_at--306--9391Chr04:34813509..34813533 (25 bp)
TCGATTCGATTCGATGCTTGTGCCC
LOC_Os04g58890
Os.48131.1.S1_s_at--1091--6571Chr04:34813507..34813531 (25 bp)
GATTCGATTCGATGCTTGTGCCCTC
LOC_Os04g58890
Os.48131.1.S1_s_at--1140--91Chr04:34813506..34813530 (25 bp)
ATTCGATTCGATGCTTGTGCCCTCC
LOC_Os04g58890
Os.48131.1.S1_s_at--365--9391Chr04:34813504..34813528 (25 bp)
TCGATTCGATGCTTGTGCCCTCCGC
LOC_Os04g58890
Os.48131.1.S1_s_at--558--4531Chr04:34813481..34813505 (25 bp)
GCCCCGGGAGAGACTCGCCGGAATT
LOC_Os04g58890
Os.48131.1.S1_s_at--86--1331Chr04:34813473..34813497 (25 bp)
AGAGACTCGCCGGAATTCGATTGCT
LOC_Os04g58890
Os.48131.1.S1_s_at--445--5991Chr04:34813472..34813496 (25 bp)
GAGACTCGCCGGAATTCGATTGCTT
LOC_Os04g58890
Os.48131.1.S1_s_at--662--1391Chr04:34813471..34813495 (25 bp)
AGACTCGCCGGAATTCGATTGCTTC
LOC_Os04g58890
Os.48131.1.S1_s_at--1122--5711Chr04:34813470..34813494 (25 bp)
GACTCGCCGGAATTCGATTGCTTCT
LOC_Os04g58890
Os.48131.1.S1_s_at--1076--1991Chr04:34813469..34813493 (25 bp)
ACTCGCCGGAATTCGATTGCTTCTT
LOC_Os04g58890
Os.48131.1.S1_s_at--778--10611Chr04:34813458..34813482 (25 bp)
TTCGATTGCTTCTTGCTGGTAGGGG
LOC_Os04g58890
Target Sequence 
TCGATTCGATTCGATGCTTGTGCCCTCCGCCCCGGGAGAGACTCGCCGGAATTCGATTGCTTCTTGCTGGTAGGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48131.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis