Browse Element(s) Details


Os.7083.1.S1_at

Description gb:BU673488
DB_XREF= gi:23514152
DB_XREF=NL_16_9
CLONE=NL_16_9
TID=Os.7083.1
CNT=21
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.7083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097E09, full insert sequence
FL= gb:AK070891.1 gb:AK071345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5890011/11hydrolase, NUDIX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58860Os.17892.1.S1_at9/114+34791894..34793355Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58870Os.18157.1.S1_at11/114+34797521..34801722Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g58880Os.6072.1.S1_at11/114+34802943..34809060exocyst subunit EXO70 family protein, putative, expressed
LOC_Os04g58890Os.48131.1.S1_s_at11/114+34812136..34813565expressed protein
LOC_Os04g58890OsAffx.14474.1.S1_at11/114+34812136..34813565expressed protein
LOC_Os04g58900Os.7083.1.S1_at11/114+34815800..34819282hydrolase, NUDIX family protein, expressed
LOC_Os04g58910Os.15783.1.S2_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58910Os.15783.1.S1_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58920Os.55614.1.S1_at11/114+34835503..34837093U-box domain containing protein, expressed
LOC_Os04g58929NANA4+34840636..34841335NA

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Gene Ontology Classification
GO idTypeName
GO:0004081molecular_functionbis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7083.1.S1_at--498--6171Chr04:34816301..34816325 (25 bp)
GAGGATCCGAGGGAAGCTGCTTTCA
LOC_Os04g58900
Os.7083.1.S1_at--267--5551Chr04:34816340..34816364 (25 bp)
GAAACGGGTGTTACATCTGCAGAAA
LOC_Os04g58900
Os.7083.1.S1_at--1149--1151Chr04:34816360..34816559 (25 bp)
AGAAATGGTGGCTGAGGTCCCCGTT
LOC_Os04g58900
Os.7083.1.S1_at--266--6851Chr04:34816557..34816581 (25 bp)
GTTTGGTTAACGTATGATTTCCCTG
LOC_Os04g58900
Os.7083.1.S1_at--996--5651Chr04:34818311..34818335 (25 bp)
GACATGGATGACACCTCAGCAAGTT
LOC_Os04g58900
Os.7083.1.S1_at--320--691Chr04:34818446..34818470 (25 bp)
ATGAGGCAGCCCTGAAACACTTTGC
LOC_Os04g58900
Os.7083.1.S1_at--373--10291Chr04:34818466..34818490 (25 bp)
TTTGCCCCATATCTACAGTCAGATC
LOC_Os04g58900
Os.7083.1.S1_at--650--7111Chr04:34818483..34818507 (25 bp)
GTCAGATCCAGCAACTACAACTTCA
LOC_Os04g58900
Os.7083.1.S1_at--928--9851Chr04:34818498..34818522 (25 bp)
TACAACTTCATCATAGCTGCAACGA
LOC_Os04g58900
Os.7083.1.S1_at--516--1351Chr04:34818544..34818568 (25 bp)
AGAGCGCTCTCATGTTGCCATAGAT
LOC_Os04g58900
Os.7083.1.S1_at--172--5231Chr04:34818613..34818637 (25 bp)
GAATACTTGGCATTATCCTGACAAT
LOC_Os04g58900
Target Sequence 
GAGGATCCGAGGGAAGCTGCTTTCAGAGAATTGAGGGAGGAAACGGGTGTTACATCTGCAGAAATGGTGGCTGAGGTCCC
CGTTTGGTTAACGTATGATTTCCCTGTTGATGTGAAAGAAAAGCTGAATGCTAGGTGGGGAGGAACGAACTGGAAAGGAC
AGGCTCAGAAATGGTTTCTATTTAGATTTACTGGGAAGGAAGATGAGGTTAACCTTAATGGTGACGGATCTGAGAGGCCG
GAGTTTTGTGAATGGACATGGATGACACCTCAGCAAGTTATTGAAAAGGCAGTTGAATTCAAAAAACCAGTATATGAGGC
AGCCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCCTGAA
GTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTT
GAATACTTGGCATTATCCTGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis