Browse Element(s) Details


OsAffx.14474.1.S1_at

Description tigr:9632.m05756
TID=OsAffx.14474.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5889011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58860Os.17892.1.S1_at9/114+34791894..34793355Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58870Os.18157.1.S1_at11/114+34797521..34801722Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g58880Os.6072.1.S1_at11/114+34802943..34809060exocyst subunit EXO70 family protein, putative, expressed
LOC_Os04g58890Os.48131.1.S1_s_at11/114+34812136..34813565expressed protein
LOC_Os04g58890OsAffx.14474.1.S1_at11/114+34812136..34813565expressed protein
LOC_Os04g58900Os.7083.1.S1_at11/114+34815800..34819282hydrolase, NUDIX family protein, expressed
LOC_Os04g58910Os.15783.1.S2_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58910Os.15783.1.S1_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58920Os.55614.1.S1_at11/114+34835503..34837093U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14474.1.S1_at--800--4211Chr04:34812618..34812642 (25 bp)
CCGCCGTCGTTCGTCGGGATGATGC
LOC_Os04g58890
OsAffx.14474.1.S1_at--1058--7651Chr04:34812603..34812627 (25 bp)
GGGATGATGCCCGTTTACTAGCCGT
LOC_Os04g58890
OsAffx.14474.1.S1_at--281--3871Chr04:34812592..34812616 (25 bp)
CGTTTACTAGCCGTCGATTCGATTA
LOC_Os04g58890
OsAffx.14474.1.S1_at--1052--4911Chr04:34812514..34812538 (25 bp)
GCTTGCGTGTGGAATTGGTGCACCA
LOC_Os04g58890
OsAffx.14474.1.S1_at--1017--8651Chr04:34812507..34812531 (25 bp)
TGTGGAATTGGTGCACCAGCGCAGA
LOC_Os04g58890
OsAffx.14474.1.S1_at--1161--3911Chr04:34812439..34812463 (25 bp)
CGGCCAAGTGCGAACGAGTCCAGAG
LOC_Os04g58890
OsAffx.14474.1.S1_at--632--2851Chr04:34812434..34812458 (25 bp)
AAGTGCGAACGAGTCCAGAGGCGCT
LOC_Os04g58890
OsAffx.14474.1.S1_at--657--4571Chr04:34812414..34812438 (25 bp)
GCGCTGGACACGTTGGAGCCTGCAA
LOC_Os04g58890
OsAffx.14474.1.S1_at--556--5871Chr04:34812399..34812423 (25 bp)
GAGCCTGCAACTAGCTTAGCTGTTA
LOC_Os04g58890
OsAffx.14474.1.S1_at--583--2531Chr04:34812391..34812415 (25 bp)
AACTAGCTTAGCTGTTACGAAGAAA
LOC_Os04g58890
OsAffx.14474.1.S1_at--1093--10311Chr04:34812222..34812246 (25 bp)
TTTTAGTTTTTCTGAGAGAGCGGGA
LOC_Os04g58890
Target Sequence 
CCGCCGTCGTTCGTCGGGATGATGCCCGTTTACTAGCCGTCGATTCGATTAGAAGAAAAAAGAAATGTAAAAAAAAAAGA
GGAGAAAAAACTGGAATTGGGGAGGCTTGCGTGTGGAATTGGTGCACCAGCGCAGAAGAGGAGTTTTTTTTTTTTTTTTT
TTTGTTATGGAGGAGGAAGCGGCCAAGTGCGAACGAGTCCAGAGGCGCTGGACACGTTGGAGCCTGCAACTAGCTTAGCT
GTTACGAAGAAATTTTCTTTTTTTTTTCTTGGGGTGGTTACTGCTTGCTGCTAGTGCTATGTGACAGGTGGTATGAGGTG
GTACGAGCCTGACCAATGTGGCTCGGTCGAATCCAGAGATTTGGACCAACATCTCTGGAACCCTCTGTTTTTTCTTTTTT
AGTTTTTCTGAGAGAGCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis