Browse Element(s) Details

Os.48168.1.S2_at

Description

gb:AK067008.1
DB_XREF= gi:32977026
TID=Os.48168.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093K13, full insert sequence.
FL= gb:AK067008.1 gb:AK063108.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g27800	10/11	Uncharacterised protein family containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g27740	OsAffx.4378.1.S1_x_at	2/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27740	Os.20851.1.A1_x_at	2/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27740	OsAffx.25778.2.S1_at	1/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27740	OsAffx.15695.1.S1_x_at	1/11	6	+	15708167..15714161	retrotransposon protein, putative, unclassified
LOC_Os06g27750	NA	NA	6	+	15716182..15717302	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27760	Os.36369.1.S1_at	11/11	6	+	15717526..15720269	Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os06g27760	Os.57412.1.S1_at	10/11	6	+	15717526..15720269	Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os06g27770	Os.15988.1.S1_at	11/11	6	+	15723708..15726432	Isoflavone reductase homolog, putative, expressed
LOC_Os06g27780	NA	NA	6	+	15730436..15731075	transposon protein, putative, unclassified
LOC_Os06g27790	Os.24588.1.S1_at	11/11	6	+	15732747..15736720	Selenium-binding protein, putative, expressed
LOC_Os06g27800	Os.48168.1.S1_at	11/11	6	+	15737396..15743796	Uncharacterised protein family containing protein, expressed
LOC_Os06g27800	Os.48168.1.S2_at	10/11	6	+	15737396..15743796	Uncharacterised protein family containing protein, expressed
LOC_Os06g27810	NA	NA	6	+	15751869..15753320	retrotransposon protein, putative, unclassified
LOC_Os06g27820	OsAffx.27839.1.S1_at	10/11	6	+	15753958..15758168	hypothetical protein
LOC_Os06g27830	Os.4939.1.S1_at	11/11	6	+	15760135..15764626	WRKY transcription factor 19, putative, expressed
LOC_Os06g27840	NA	NA	6	+	15768343..15775360	retrotransposon protein, putative, LINE subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.48168.1.S2_at--1124--807	1	Chr06:15743047..15743071 (25 bp)	GGAGCTCATATAATAGTGGCACATA	LOC_Os06g27800
Os.48168.1.S2_at--218--887	1	Chr06:15743154..15743178 (25 bp)	TGATGCAGCACTTGGGATTAATCCT	LOC_Os06g27800
Os.48168.1.S2_at--507--863	1	Chr06:15743166..15743190 (25 bp)	TGGGATTAATCCTGACATTATTGTT	LOC_Os06g27800
Os.48168.1.S2_at--774--865	1	Chr06:15743192..15743396 (25 bp)	TGTGTCATGGAGGTCCCATATCAGG	LOC_Os06g27800
Os.48168.1.S2_at--476--101	1	Chr06:15743382..15743406 (25 bp)	AGGTCCCATATCAGGGCCGCAGGAG	LOC_Os06g27800
Os.48168.1.S2_at--1068--235	1	Chr06:15743421..15743445 (25 bp)	AAAGCGCACTAACAGGGTCCATGGA	LOC_Os06g27800
Os.48168.1.S2_at--658--675	1	Chr06:15743544..15743568 (25 bp)	GTTCAGACTTCAAATATGTCCTTTG	LOC_Os06g27800
Os.48168.1.S2_at--606--459	1	Chr06:15743698..15743722 (25 bp)	GCGAATGATTTCGTGCTTACTTAAT	LOC_Os06g27800
Os.48168.1.S2_at--1151--1061	1	Chr06:15743707..15743731 (25 bp)	TTCGTGCTTACTTAATAACTATCCA	LOC_Os06g27800
Os.48168.1.S2_at--94--389	1	Chr06:15743750..15743774 (25 bp)	CTGTAACCATGACAAAATCTGTGAT	LOC_Os06g27800
Os.48168.1.S2_at--491--991	1	Chr06:15743789..15743813 (25 bp)	TACGGACCAAATGGAAGTTCGGACT	NONE

Target Sequence

GGAGCTCATATAATAGTGGCACATATGGGTNTAACAACAGCTGGGTNTATTGGGGCAAAGACTGCTGTCNCTTTAGATGA
CAGTGTCANACGTGTTCAAGCCATTGNTGATGCAGCACTTGGGATTAATCCTGACATTATTGTTNTGTGTCATGGAGGTC
CCATATCAGGGCCGCAGGAGGCAGAGTTTNTCCTAAAGCGCACTAACAGGGTCCATGGATTNTATGGTGCATCAAGCATG
GAGCGGNTNCCAGTTGAGCAAGCTATCACAAACNCCATGAGGGAGTATNAACGGATTTCCATAAAATAAGAATGATAGTT
CAGACTTCAAATATGTCCTTTGCTNTACATGGTNCTGATNTTCATNCTGATTCAANGAACAATAATGGAAGAGGAAGCCA
GGTGTNTGTGCATTGTTGTNCCATATGCGGCNCATGTACTNGTGTATTTCAGTCGGAATAAAGAATGATAAGCGAATGAT
TTCGTGCTTACTTAATAACTATCCATANTAAGACGATAAGTTNCTGTAACCATGACAAAATCTGTGATAAAGACCGAAAT
TTTACGGACCAAATGGAAGTTCGGACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis