Browse Element(s) Details


Os.48257.1.A1_at

Description gb:CR280063
DB_XREF= gi:44666629
DB_XREF=CR280063
CLONE=p640f11p3
TID=Os.48257.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48257 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565462.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3111011/11CRS2-associated factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31070OsAffx.16343.1.S1_at1/111+17314501..17315839retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31080NANA1+17316231..17318848retrotransposon protein, putative, unclassified
LOC_Os01g31090NANA1+17325659..17326471hypothetical protein
LOC_Os01g31100OsAffx.23458.2.S1_at11/111+17332350..17333120hypothetical protein
LOC_Os01g31110Os.15474.1.S1_x_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110Os.43143.1.S1_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110Os.48257.1.A1_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110OsAffx.31445.1.S1_x_at2/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31120NANA1+17347843..17350482hypothetical protein
LOC_Os01g31124NANA1+17351577..17352478hypothetical protein
LOC_Os01g31130OsAffx.7695.1.S1_at2/111+17353329..17356260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31140OsAffx.23459.1.S1_at11/111+17360574..17360882hypothetical protein
LOC_Os01g31140OsAffx.23459.1.S1_x_at11/111+17360574..17360882hypothetical protein
LOC_Os01g31150OsAffx.31869.1.S1_at2/111+17362682..17364082retrotransposon protein, putative, unclassified
LOC_Os01g31150OsAffx.31869.5.S1_x_at1/111+17362682..17364082retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.1198.1.S1_at11/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160Os.38751.1.A1_at2/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.28492.1.S1_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160Os.49802.1.S2_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.30280.1.S1_x_at1/111+17364579..17369123retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48257.1.A1_at--919--4891Chr01:17340144..17340168 (25 bp)
GCTTAATATCGGTGAGTTGCATCTG
LOC_Os01g31110
Os.48257.1.A1_at--807--491Chr01:17340151..17340175 (25 bp)
ATCGGTGAGTTGCATCTGATGCAGC
LOC_Os01g31110
Os.48257.1.A1_at--542--6331Chr01:17340168..17340192 (25 bp)
GATGCAGCATCACTCAATTGTACAC
LOC_Os01g31110
Os.48257.1.A1_at--644--3171Chr01:17340183..17340207 (25 bp)
AATTGTACACATGGAACATCAACTA
LOC_Os01g31110
Os.48257.1.A1_at--576--8171Chr01:17340195..17340219 (25 bp)
GGAACATCAACTAATTCGACAGATA
LOC_Os01g31110
Os.48257.1.A1_at--769--9011Chr01:17340226..17340250 (25 bp)
TGCAAGATTTGTTTCCCCCTTGGGC
LOC_Os01g31110
Os.48257.1.A1_at--1023--8631Chr01:17340246..17340270 (25 bp)
TGGGCTCTGGTACCCTGTTATGTCT
LOC_Os01g31110
Os.48257.1.A1_at--368--10291Chr01:17340291..17340315 (25 bp)
TTTCCTATAAAAGACTCGTGCTCTA
LOC_Os01g31110
Os.48257.1.A1_at--158--1411Chr01:17340302..17340326 (25 bp)
AGACTCGTGCTCTATGTGTTTTGGC
LOC_Os01g31110
Os.48257.1.A1_at--29--4831Chr01:17340310..17340334 (25 bp)
GCTCTATGTGTTTTGGCTTTCTTTA
LOC_Os01g31110
Os.48257.1.A1_at--409--791Chr01:17340315..17340339 (25 bp)
ATGTGTTTTGGCTTTCTTTACAAAG
LOC_Os01g31110
Target Sequence 
GCTTAATATCGGTGAGTTGCATCTGATGCAGCATCACTCAATTGTACACATGGAACATCAACTAATTCGACAGATAAATG
TCTGCAAGATTTGTTTCCCCCTTGGGCTCTGGTACCCTGTTATGTCTGTCTGTGTTCTTTTGTTTTCTTTCCTATAAAAG
ACTCGTGCTCTATGTGTTTTGGCTTTCTTTACAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48257.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis