Browse Element(s) Details


Os.48291.1.S1_at

Description gb:AK073368.1
DB_XREF= gi:32983391
TID=Os.48291.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026O22, full insert sequence.
FL= gb:AK073368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5958011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59530Os.47463.1.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59530Os.14491.2.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59540Os.52597.1.S1_at11/114+35194225..35199766Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os04g59550Os.6715.1.S1_at11/114+35199872..35202466glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os04g59560Os.49141.1.S1_at10/114+35203978..35207760CAP-Gly domain containing protein, expressed
LOC_Os04g59570Os.5577.2.S1_a_at11/114+35207902..35210490expressed protein
LOC_Os04g59570Os.5577.2.S1_at11/114+35207902..35210490expressed protein
LOC_Os04g59580Os.48291.1.S1_at11/114+35211264..35213719Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g59590Os.53076.1.S1_at11/114+35215925..35220062dehydration-responsive protein, putative, expressed
LOC_Os04g59600Os.50410.1.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.2.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S1_x_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S2_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59610Os.52938.1.S1_a_at11/114+35224850..35226493expressed protein
LOC_Os04g59620OsAffx.14482.1.S1_at11/114+35226841..35240731SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48291.1.S1_at--396--1951Chr04:35212665..35212689 (25 bp)
ACTGGAGTGTTTCTTGCCATTGGCC
LOC_Os04g59580
Os.48291.1.S1_at--933--6731Chr04:35212629..35212653 (25 bp)
GTTCTTGCATGGTTAGTTGCTCCAC
LOC_Os04g59580
Os.48291.1.S1_at--147--7871Chr04:35212619..35212643 (25 bp)
GGTTAGTTGCTCCACATGTTGGTAA
LOC_Os04g59580
Os.48291.1.S1_at--528--7411Chr04:35211863..35211887 (25 bp)
GTGATTTGTCTTCACATGCTTCTTG
LOC_Os04g59580
Os.48291.1.S1_at--167--4631Chr04:35211827..35211851 (25 bp)
GCGTTGACTATAATAATCTCCCTGA
LOC_Os04g59580
Os.48291.1.S1_at--167--8551Chr04:35211580..35211604 (25 bp)
TGGAGTTTGGGCATCACGGACCCAC
LOC_Os04g59580
Os.48291.1.S1_at--181--7871Chr04:35211512..35211536 (25 bp)
GGTTTCGGTCTTATACTATCCACAT
LOC_Os04g59580
Os.48291.1.S1_at--411--10131Chr04:35211496..35211520 (25 bp)
TATCCACATCCGCTGTGCAGTGATA
LOC_Os04g59580
Os.48291.1.S1_at--1079--8271Chr04:35211466..35211490 (25 bp)
GGCATCTTTGTGTATACCCATCTCT
LOC_Os04g59580
Os.48291.1.S1_at--946--9951Chr04:35211452..35211476 (25 bp)
TACCCATCTCTATATATATTGCTTC
LOC_Os04g59580
Os.48291.1.S1_at--536--2091Chr04:35211324..35211348 (25 bp)
ACATCTAGACTACCATATAGCCTTA
LOC_Os04g59580
Target Sequence 
ACTGGAGTGTTTCTTGCCATTGGCCTANGTGTTATTGTTCTTGCATGGTTAGTTGCTCCACATGTTGGTAAGAAAGCTGC
TGTGATTTGTCTTCACATGCTTCTTGGANGTTTATGTNGCGTTGACTATAATAATCTCCCTGAGATTTGTTTTCCCNAGG
ATCCAATATGGATNTNATGCGATGTTGGGCGATCTTNGTTTGTGTTTTGGTTCCTGGTTTTTGGAGTTTGGGCATCACGG
ACCCACAGTATACNCTCCTCATGANGATGGAGATNATGGTGAGAAAGTAGGTTTCGGTCTTATACTATCCACATCCGCTG
TGCAGTGATAGATATGGCATCTTTGTGTATACCCATCTCTATATATATTGCTTCTGAATTTTTCGAANTAAATATGTCAG
ATGTNTATGCATGACCACAAGAAAAAGGNAAAGTTTGTTATTGGTGTTACAGTAGACTGCTAGTATTAATTTGATATACA
TCTAGACTACCATATAGCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis